AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chna8g01031 ATGGGTTCCGAAATAACCGAACCATTCCTAACAGACTCATCATCTCAAGCCAAACAACCAGACAATGATGATCTGGAATCCATACCAGAATGGAAAGATCAGATCACACTAAGAGGACTGATAGTCAGTGCTTTGTTAGGGACTTTGTTTTGTATAATAACTCATAAGCTGAATTTAACAGTGGGGATTATCCCTTCGTTAAATGTAGCGGCTGGTTTGTTGGGGTTCTTTTTTGTCAAGTCGTGGACTAGTGTTGTGGAGAGGTTTGGTGTTGTTGTTAAGCCGTTTACGAGGCAGGAGAATACTGTTATTCAGACTTGTGTTGTTGCTTGTTATGGCCTTGCTTTTAGTGGTGGATTTGGGTCATATTTGCTTTCAATGGATGAGAGAACATACAATTTGATTGGTGCGGACTACCCGGGTAACCGGGCTGAGGATGTTAAGAACCCGGGGCTATTGTGGATGATGGGTTTCATTTTTGTCGTCAGTTTTCTTGGCCTTTTTAGTCTTGTTCCACTTCGCAAGGTCATGGTAATGGATTATAAGCTTACATACCCTAGTGGAACTGCCACTGCAATGCTGATCAATAGTTTTCACACTACCACTGGTGCAGAGCTTGCAAGGAAACAAGTAAACTGTCTTGGAAAGTATTTGAGCATAAGTTTTGTCTGGAGTTGCTTTAAGTGGTTTTTCAGTGGTGTTGGGGATGCTTGTGGTTTTGACAATTTTCCGAGTTTTGGCTTGATTTTGTACAACAACACATTCTACTTTGACTTCAGTCCAACTTATGTCGGATGTGGTCTTATCTGCCCTCACATAGTCAACTGTTCGGTTCTTTTTGGAGCTATTGTATCATGGGGTTTTCTTTGGCCACTGATTACTACATATGCAGGAGATTGGTATCCAGCTGATCTTGGCAGCAATGACTTCAAAGGTCTCTATGGCTATAAGGTCTTTATATCCATTGCCCTTATTCTTGGAGATGGTCTTTACAATCTGGTTAAGATAATATTCATCTCCCTTAAGGCGTTGTTGAACAGCCGCACTAAGCAACAAAATCTTCCTGTAACACACGAGATTCTAGATGCGGAGACAACTCAACTACAACTCGAAGAAAAAAAACGAGACACCGTTTTCTTAAAAGACAATATACCAACATGGGTTGCAGCATCCGGATACATAGCCTTAGTAGGAATATCCATGGCTACAATGCCACTCATATTCCCACCGCTAAAATGGTACCTCGTCCTATGCTCATACATTATCGCACCTGCATTAGCTTTTTGCAACTCATACGGAACTGGTCTCACTGATTGGAGTCTAGCTTCAACATATGGCAAAATCGGTCTATTCATCATAGCATCATTAGTCGGAAGCGATGGTGGGGTCATAGCTGGTTTAGCTGCATGTGGGGTCATGATGTCAATTGTTTCAACCGCTGCTGATTTAATGCAAGATTTCAAAACTGGCTACCTTACATTATCGTCAGCAAAATCCATGTTTGTGAGTCAGTTAGTCGGAACAGCTATGGGATGCATCATTGCACCACTCACGTTTTGGATGTTTTGGAGCGCGTTCGAAATCGGGACTCCCGATAGTCCTTACAAGGCGCCGTATGCTGTCATATACCGTGAAATGGCTATCCTTGGTGTCGAGGGGTTCTCCGAGCTCCCCAAACATTGTTTGGCTTTATGTTGTGGGTTCTTTGTGGCAGCACTGGTCTTAAATCTTTTGCGAGATTTTACTCCCAAAAAGGTGTCTCAGTTCATACCTATTCCAATGGCAATGGCAGTTCCATTCTATATCGGGGCGTATTTTGCGATCGATATGTTTATTGGAACAGTGATACTCTTTGTGTGGGAGCGATTGAACAAGAAAGATGCTGAAGATTATGCAGGCGCAGTTGCTTCAGGCTTAATATGTGGTGATGGGATATGGACCATCCCATCAGCTATACTCTCGATTCTAAGGGTTGATCCACCAATCTGCATGTACTTTGGACCGTCTGTGAGTTCGTGA 2019 42.84 MGSEITEPFLTDSSSQAKQPDNDDLESIPEWKDQITLRGLIVSALLGTLFCIITHKLNLTVGIIPSLNVAAGLLGFFFVKSWTSVVERFGVVVKPFTRQENTVIQTCVVACYGLAFSGGFGSYLLSMDERTYNLIGADYPGNRAEDVKNPGLLWMMGFIFVVSFLGLFSLVPLRKVMVMDYKLTYPSGTATAMLINSFHTTTGAELARKQVNCLGKYLSISFVWSCFKWFFSGVGDACGFDNFPSFGLILYNNTFYFDFSPTYVGCGLICPHIVNCSVLFGAIVSWGFLWPLITTYAGDWYPADLGSNDFKGLYGYKVFISIALILGDGLYNLVKIIFISLKALLNSRTKQQNLPVTHEILDAETTQLQLEEKKRDTVFLKDNIPTWVAASGYIALVGISMATMPLIFPPLKWYLVLCSYIIAPALAFCNSYGTGLTDWSLASTYGKIGLFIIASLVGSDGGVIAGLAACGVMMSIVSTAADLMQDFKTGYLTLSSAKSMFVSQLVGTAMGCIIAPLTFWMFWSAFEIGTPDSPYKAPYAVIYREMAILGVEGFSELPKHCLALCCGFFVAALVLNLLRDFTPKKVSQFIPIPMAMAVPFYIGAYFAIDMFIGTVILFVWERLNKKDAEDYAGAVASGLICGDGIWTIPSAILSILRVDPPICMYFGPSVSS 672
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chna8g01031 672 MobiDBLite consensus disorder prediction 1 26 - -
Chna8g01031 672 Pfam OPT oligopeptide transporter protein 34 653 IPR004813 GO:0035673(InterPro)
Chna8g01031 672 PANTHER OLIGOPEPTIDE TRANSPORTER YGL114W-RELATED 15 668 IPR045035 GO:0016020(PANTHER)|GO:0035673(InterPro)
Chna8g01031 672 NCBIfam OPT family oligopeptide transporter 33 650 IPR004813 GO:0035673(InterPro)
Chna8g01031 672 MobiDBLite consensus disorder prediction 1 22 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chna8g01031 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
59512 Chna4g02603 Chna8g01031
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chna Chna-Chr4:241134266 Chna8g01031 Chna-Chr8:100570074 transposed
Chna Chna-Chr5:179557070 Chna8g01031 Chna-Chr8:100570074 transposed
Chna Chna-Chr6:66833372 Chna8g01031 Chna-Chr8:100570074 transposed
Chna Chna-Chr6:276312898 Chna8g01031 Chna-Chr8:100570074 transposed
Chna Chna-Chr8:123972289 Chna8g01031 Chna-Chr8:100570074 transposed
Chna Chna-Chr8:158549978 Chna8g01031 Chna-Chr8:100570074 transposed
Chna Chna-Chr8:189428801 Chna8g01031 Chna-Chr8:100570074 transposed
Chna Chna-Chr4:198609951 Chna8g01031 Chna-Chr8:100570074 wgd