AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Chna8g01032 | ATGGAAGATGAATATGCAAAACTTATTAGAAGAATGAATCCACCCAGAGTCACAATTGATAACAATTCTTCACCAGATGCAACTGTTATACAGGTTGAAAGTGTAAATAAGCATGGGATTCTGTTGGAAGTTGTGCAAGTTCTATCGGATTTAGACCTTGTTATAACCAAAGCGTATATATCGTCGGATGGAGGGTGGTTCATGGATGTTTTCAGTGTTACTTATCGGGATGGAAGCAAAATTCGAGATGAAGGTGTTGTCAATTACATAAAAGAGGTGCTTGAAAACGATGCATTTTATGTACCAACACTGAGTAGCTCAGTTGGATTGAAGCCTTCAGAAGATTACACAGCAATCGAGCTAGTTGGCGCAGACAGACCTGGATTGTTATCTGAAGTATCTGCAGTACTAACAGATCTTGGTTGTAATGTGGTGAGTGCTGAAATATGGACTCACAATGCTAGAGCTGCAGCCGTGGTTCACGTCACAGATGAGAAAACGAGATGTGCAGTTGAAGACCCAAAGAGGCTCTTAACTATTAAGAAATTGCTTTGTAATGTTCTTAAGGGAAACAATGACTTGAAAACTGCAAAAATGACACTTTCGGCCCCTGGTTACATGCACAGACAGAGAAGATTACATCAAATTATGTTTGCTGAGCGGGATTATGAAAAGATTGAAAGGGCAGAACAGGAAGACAGGTTAAGGCCACAGGTTACTGTTTTAGATTGCGTTGAGAAGGATTACACGGTTATTACCATGCATTGTAGGGATCGACCAAAGCTGTTGTTTGATATTATCTGCACTCTTACTGACATGGAGTATGTAGTTTTCCATGGAGTTGTTCACACAGGGAAGATGGAAGCTTTTCAGGAATACTACATTCGTCATGTTGATGGATGCCCAGTAAGCTCAGAGGCAGAGCGAGAGCGAGTTATGCAGTGTCTTGAAGCTGCAATTGAGAGGAGAACGTCCGAGGCGCTTGAGCTAGAGTTATGCACAGCAGATCGTGTTGGACTTCTTTCTGATATAACCAGGATCTTTAGAGAAAACAGTTTATGTATAAAAAGAGCAGAGATATCAACTGAAGGTGGAAAAGCCAAGGATAAATTTTATGTGACGGACATGACGGGTAATAGCCCTGTGGACCCGAAGACCATAGATTCTATCCAGAGACAAATCGGGCAACATGCAGCACTGCATGTCAGATGGAACTCTACCCAATCACCAGAGCCACCACCTGAAGAAACAACAATGAGCTTTCTGTTTGGAAACTTGTTTAAAGTGGTCGGATCATACTCCTGA | 1305 | 41.76 | MEDEYAKLIRRMNPPRVTIDNNSSPDATVIQVESVNKHGILLEVVQVLSDLDLVITKAYISSDGGWFMDVFSVTYRDGSKIRDEGVVNYIKEVLENDAFYVPTLSSSVGLKPSEDYTAIELVGADRPGLLSEVSAVLTDLGCNVVSAEIWTHNARAAAVVHVTDEKTRCAVEDPKRLLTIKKLLCNVLKGNNDLKTAKMTLSAPGYMHRQRRLHQIMFAERDYEKIERAEQEDRLRPQVTVLDCVEKDYTVITMHCRDRPKLLFDIICTLTDMEYVVFHGVVHTGKMEAFQEYYIRHVDGCPVSSEAERERVMQCLEAAIERRTSEALELELCTADRVGLLSDITRIFRENSLCIKRAEISTEGGKAKDKFYVTDMTGNSPVDPKTIDSIQRQIGQHAALHVRWNSTQSPEPPPEETTMSFLFGNLFKVVGSYS | 434 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Chna8g01032 | 434 | Pfam | ACT domain | 118 | 166 | IPR002912 | - | |
| Chna8g01032 | 434 | ProSiteProfiles | ACT domain profile. | 118 | 199 | IPR002912 | - | |
| Chna8g01032 | 434 | SUPERFAMILY | ACT-like | 24 | 93 | IPR045865 | - | |
| Chna8g01032 | 434 | ProSiteProfiles | ACT domain profile. | 329 | 410 | IPR002912 | - | |
| Chna8g01032 | 434 | SUPERFAMILY | ACT-like | 324 | 398 | IPR045865 | - | |
| Chna8g01032 | 434 | PANTHER | ACT DOMAIN-CONTAINING PROTEIN ACR4-RELATED | 7 | 405 | IPR040217 | - | |
| Chna8g01032 | 434 | CDD | ACT-ACR-3 | 249 | 323 | - | - | |
| Chna8g01032 | 434 | CDD | ACT-ACR-2 | 117 | 190 | - | - | |
| Chna8g01032 | 434 | ProSiteProfiles | ACT domain profile. | 29 | 107 | IPR002912 | - | |
| Chna8g01032 | 434 | Gene3D | - | 114 | 183 | - | - | |
| Chna8g01032 | 434 | SUPERFAMILY | ACT-like | 113 | 171 | IPR045865 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Chna8g01032 | - | - |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 60064 | Chna6g02136 | Chna8g01032 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Chna | Chna-Chr6:167396648 | Chna8g01032 | Chna-Chr8:100785712 | dispersed | |
| Chna | Chna-Chr7:308817052 | Chna8g01032 | Chna-Chr8:100785712 | dispersed | |
| Chna | Chna-Chr8:100785712 | Chna8g01094 | Chna-Chr8:104561630 | dispersed | |
| Chna | Chna-Chr9:38936439 | Chna8g01032 | Chna-Chr8:100785712 | dispersed | |
| Chna | Chna-Chr8:100785712 | Chna8g02084 | Chna-Chr8:164793230 | wgd |