AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chna8g01065 ATGTCCACAAATATTAACCTATATGGAGCTAATACAACCTACCATAGATCACTATACTCACACCAGCACCTGAGTTTTGCATCTTCAGTTGCGTCGTTTCGCGGAACGTGTAGAGTGGTTCAGGGTCGGGTTTCGTGTAGGGGGAGTGGGTTTAAGGTGGTTTGTAATGCGCAGAAAGTTGAGGTTCTTACTAGAAGTGAAAATGATATACGGGGTTTGGAAGGAGTGAGTAAGGAGTTGTCGTGTGTGATGAAGTTTGGTGGATCGTCTGTTGCGTCTGCTGAACGGATGAAAGAAGTGGCGGCTCTGATACTTAGGTTTCCGGAAGAAAGTCCGGTTATTGTTTTGTCTGCTATGGGCAAAACCACTAACAAGATTCTATTGGCTGGAGAGAAGGCTAAATGCGGCGAATCAGTTGTGGCTGAAATTAACGAATTGAGAGAACTCCACCATAGGACAGTGGATGAGCTTGGATTAGATAGATCGATCATTACATACCATTTAGAAAAATTAAAGCGACTTTTGGAAGTGATTGCTGAACTAAAAGAGTTTACACCACGTACAAGGGACTACCTAGTCTCATTTGGGGAGCGCATGTCCACAAGAATTTTTGCAGCATATTTAAATAAACTAGGTGTCAAAGCCCGCCAATATGATGCATTTGAAATTGGCTTCATAACAACAGATGACTTTACTAATGCGGATATTTTGGAAGAAACATATCCAGCTGTTGCAGAGAGACTTAATGGTGATTGGTTTAAGGATCCTGCAATTCCTATTGTCACTGGCTTTCTTGGAAAGGGCAAGAAAACTGGTGATGTGACAACATTGGGCAGAGGTGGCAGTGATTTGACTGCCACCACCATTGGTAAAGCTCTTGGGTTGCGAGAAATTCAGGTATGGAAAGATGTAGATGGTGTCTTGACATGTGACCCAAATATACACAAGGGTGCAGAACCTGTGCCATATTTGACTTTTGATGAGGCAGCTGAACTTGCATATTTTGGTGCCCAGGTCCTACATCCTCAGTCTATGAGGCCTGCAAGAGAGGGTGACATACCTGTTAGGGTTAAAAATTCGTATAACCCTAATGCTCCTGGTACCCTAATCACTAAATCAAGAGATATGAGTAAGGCAGTACTAACCAGCATTGTTTTGAAACGTAATGTAACTATGTTAGACATCGTTAGCACTCGCATGCTTGGCCAATTTGGATTCCTAGCTAAGGTTTTCTCAATTTTTGAGGACTTGGGTATATCCGTGGATGTTGTAGCTACTAGTGAAGTTAGCATTTCCCTAACGTTAGATCCTTCAAAGCTGTGGAGCAGGGAGTTGATTCAGCAGGCAAGCGAACTTGATCATGTTGTGGAAGAACTTGAAAAAATTGCTAAAGTGAATCTCCTGCAACATAGATCGATTATTTCACTCATTGGGAATGTTCAGAGGTCCTCACTTGTATTGGAAAAGGCATTTCGTGTTCTTCGTGTGAATGGAGTGAATGTTCAGATGATATCACAAGGAGCATCGAAGGTGAATATATCACTTATAGTAAATGACAGTGAATCAGAAAAATGCGTGAGAGCTCTGCATTCGGCTTTCTTTGAGGATGATATGTCTGATATCAACTGA 1629 42.05 MSTNINLYGANTTYHRSLYSHQHLSFASSVASFRGTCRVVQGRVSCRGSGFKVVCNAQKVEVLTRSENDIRGLEGVSKELSCVMKFGGSSVASAERMKEVAALILRFPEESPVIVLSAMGKTTNKILLAGEKAKCGESVVAEINELRELHHRTVDELGLDRSIITYHLEKLKRLLEVIAELKEFTPRTRDYLVSFGERMSTRIFAAYLNKLGVKARQYDAFEIGFITTDDFTNADILEETYPAVAERLNGDWFKDPAIPIVTGFLGKGKKTGDVTTLGRGGSDLTATTIGKALGLREIQVWKDVDGVLTCDPNIHKGAEPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLITKSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQFGFLAKVFSIFEDLGISVDVVATSEVSISLTLDPSKLWSRELIQQASELDHVVEELEKIAKVNLLQHRSIISLIGNVQRSSLVLEKAFRVLRVNGVNVQMISQGASKVNISLIVNDSESEKCVRALHSAFFEDDMSDIN 542
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chna8g01065 542 SUPERFAMILY Carbamate kinase-like 83 373 IPR036393 -
Chna8g01065 542 Gene3D - 83 370 IPR036393 -
Chna8g01065 542 Gene3D - 382 534 - -
Chna8g01065 542 Pfam Amino acid kinase family 82 359 IPR001048 -
Chna8g01065 542 FunFam Aspartokinase 391 464 - -
Chna8g01065 542 FunFam Aspartokinase 120 212 - -
Chna8g01065 542 NCBIfam aspartate kinase 83 535 IPR001341 GO:0004072(InterPro)|GO:0008652(InterPro)
Chna8g01065 542 FunFam Aspartokinase 1 465 534 - -
Chna8g01065 542 SUPERFAMILY ACT-like 462 537 IPR045865 -
Chna8g01065 542 Coils Coil 442 462 - -
Chna8g01065 542 ProSiteProfiles ACT domain profile. 395 475 IPR002912 -
Chna8g01065 542 Pfam ACT domain 474 533 IPR054352 -
Chna8g01065 542 FunFam Aspartokinase 185 370 - -
Chna8g01065 542 ProSitePatterns Aspartokinase signature. 83 91 IPR018042 GO:0004072(InterPro)|GO:0008652(InterPro)
Chna8g01065 542 PANTHER ASPARTATE KINASE 80 535 - GO:0004072(PANTHER)|GO:0005829(PANTHER)|GO:0009089(PANTHER)|GO:0009090(PANTHER)|GO:0009570(PANTHER)
Chna8g01065 542 Gene3D Aspartokinase, catalytic domain 120 212 IPR042199 -
Chna8g01065 542 Gene3D - 391 468 - -
Chna8g01065 542 SUPERFAMILY ACT-like 379 479 IPR045865 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chna8g01065 K00928 aspartate kinase [EC:2.7.2.4]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chna Chna-Chr8:102401096 Chna9g01895 Chna-Chr9:81411217 dispersed