AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chna8g01070 ATGTTGCGAGCCGGAAGCCGGAGATTAGCAGCCTCCCTCACATCTCCATGGAGGCAAACAACCGTCATCTCCCCCCATATTACTCAGATCTCCGACGACCACCACAACACCGCCGCCGCCGACAATGATGTCCGATCGATCTATCGCTCCAACCTCATTTCCAGAGGCGCTGGTGTGACTCGAGGTGAACACATACGGGAATTCATGTGTTTTCTGCCACCTACTGCTCTCAAGATGGAATTGATGCATCCTGCTCTAGAATCTAGATTCTTTGTATGTTGTATCGATTCCATTGAAATTGCAAGGTTTGCTTCGAATTCGATAACCCCAAATTTTGAGGACAGAGTTCCACCAACAATAGCAGCCATCACGAACCCTACTTCCAAAATTGTCTATGATCAGTACAATCACGAGCGTTACCCACCTGGTGACCCAAGCAAGCGAGCATTTGCCTATTTTGTCTTGACAGGTGGCAGGTTTGTGTATGCTTCCCTGATTAGGCTTTTGGTCCTCAAATTTGTTCTCAGCATGTCTGCCAGTAAAGACGTTCTTGCCCTTGCATCTCTTGAGGTTGATCTCGCTAGCATTGAGCCTGGAACCACCGTGACAGTTAAGTGGCGTGGAAAGCCCGTTTTTATCAGGCGCCGGACAGATGATGATGTGAAGTTGGCTAACAGTGTTGATGTTGCATCTCTTCGGGACCCACAAGAGGATGCTGCTAGGGTGAAGAACCCTGAATGGCTTATTGTGGTTGGTGTATGCACCCATCTGGGTTGCATCCCACTACCGAATGCTGGTGATTTTGGTGGGTGGTTTTGCCCTTGTCACGGTTCTCATTATGACATTTCTGGCCGGATCCGTAAGGGCCCAGCACCTTACAACTTGGAGGTCCCAACTTACAGTTTCTTGGAAGACAACAAATTGCTCATCGGATGA 936 48.82 MLRAGSRRLAASLTSPWRQTTVISPHITQISDDHHNTAAADNDVRSIYRSNLISRGAGVTRGEHIREFMCFLPPTALKMELMHPALESRFFVCCIDSIEIARFASNSITPNFEDRVPPTIAAITNPTSKIVYDQYNHERYPPGDPSKRAFAYFVLTGGRFVYASLIRLLVLKFVLSMSASKDVLALASLEVDLASIEPGTTVTVKWRGKPVFIRRRTDDDVKLANSVDVASLRDPQEDAARVKNPEWLIVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPTYSFLEDNKLLIG 311
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chna8g01070 311 PRINTS Rieske 2Fe-2S subunit signature 283 295 IPR005805 GO:0016020(InterPro)|GO:0051537(InterPro)
Chna8g01070 311 PRINTS Rieske 2Fe-2S subunit signature 271 283 IPR005805 GO:0016020(InterPro)|GO:0051537(InterPro)
Chna8g01070 311 PRINTS Rieske 2Fe-2S subunit signature 249 260 IPR005805 GO:0016020(InterPro)|GO:0051537(InterPro)
Chna8g01070 311 Pfam Ubiquinol cytochrome reductase transmembrane region 144 182 IPR004192 GO:0008121(InterPro)
Chna8g01070 311 Gene3D - 180 311 IPR036922 GO:0051537(InterPro)
Chna8g01070 311 PANTHER CYTOCHROME B-C1 COMPLEX SUBUNIT RIESKE, MITOCHONDRIAL 115 311 IPR014349 GO:0005750(PANTHER)|GO:0006122(PANTHER)|GO:0016491(PANTHER)|GO:0051537(InterPro)
Chna8g01070 311 NCBIfam ubiquinol-cytochrome c reductase iron-sulfur subunit 167 311 IPR006317 GO:0008121(InterPro)
Chna8g01070 311 ProSiteProfiles Rieske [2Fe-2S] iron-sulfur domain profile. 221 309 IPR017941 GO:0051537(InterPro)
Chna8g01070 311 CDD Rieske-cytochrome-bc1 188 311 - -
Chna8g01070 311 Pfam Rieske [2Fe-2S] domain 241 296 IPR017941 GO:0051537(InterPro)
Chna8g01070 311 FunFam Cytochrome b-c1 complex subunit Rieske, mitochondrial 181 311 - -
Chna8g01070 311 SUPERFAMILY ISP transmembrane anchor 123 184 - -
Chna8g01070 311 SUPERFAMILY ISP domain 173 310 IPR036922 GO:0051537(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chna8g01070 K00411 ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chna Chna-Chr8:102475371 Chna8g02056 Chna-Chr8:163120123 wgd