AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cich2g01173 | ATGGAAGAATCACGAGATCCATTTCTTCAACCTAATGTCATTGAATCTACCAACGGGTACAGTGGACGTTTCAACCTTGATAAACGTGGTCGCCAGAACTTCATCGGGCCTGGTTTTCCAGGGTTAAAAAAGCGAGGTCATGCTCTTGGAAACCGTTCCTGGATCAAAATTGAACAAAGTGGAAACTCAAAGATCGTGGAGTTAGATAAAGCTACTGTAATGAGGCATTGTTCTTTACCTGCAAGAGATCTTCGGCTTTTGGATCCTCTTTTTATTTATCCTTCAACAATATTAGGGCGTGAGAAAGCTATTGTGGTTAGTCTTGAACAGATTAGATGTATAATTACAGCTGATGAAGTGTTTCTTATGAATTCATTGGATGGGTCTGTGGTTCAGTATAAGTCAGAATTGAGTAAACGCCTTCAGGAAGAGAAATGTCACTCAGATGACCTTCCGTTCGAGTTTAGGGCACTGGAACTAGCTTTGGAGTTTACTTGCCTCACTCTTGATACTCAGGTGAAAGAATTAGAGATGGAAATTCATCCTGTACTTGATGAACTAGCAAAATCAATAAGCACCCTAAATCTCGAACGTGTTCGTAGATTCAAAGGCCACCTTTTAGCATTGACTCAACGCGTGCAAAAGGTTTGTGATGAGATAGAACATCTAATGAATGATGATGGAGATATGGCTGAAATGTACCTAACAGAGAAAAAACAAAGGAACTCATGTCCCGATTTATATGATCAAGTTCAAGGTAGTATTTCAGTGGGACCCGGGCCTGGGCCCGCAGTGGGAATGGGGTCAAAATCTGCCCCGGTTTCTCCAGTGGGGTCCACAAGTGATGCACAGAAATTGCAAAGGGCGTTTAGTAATATAAGTGCACATAAACATGGAAGCTTGTTGAGTTCATCTGTAACTGGTGAAACTGAAAACATTGATCAACTTGAGATGTTGCTTGAAGCTTATTTTGTTGGAATTGACAACACGTTGAACAAGTTGCTTTCGCTCAAGGAATATATCGATGACACCGAAGATCTCATCAACATTAAGCTTGGAAATGTTCAAAACAAGCTGATTAAATTCGAGCTACTATTAACAGCCGCGACATTTTTAGCAACGGTATTTGCGGTTGTGACAGCTGTATTTGGAATGAACTTTGAAGACGAGGTTTTCGATGAGCCAAATAGATTCAATTGGGTGGTTTCCATTAGTGCGTCATTATGTGGAGTTTTGTATATTTGTTTCTTGTTTTATTTCAAACACAAAAAGGTTTTCCCTTTGTAG | 1287 | 40.17 | MEESRDPFLQPNVIESTNGYSGRFNLDKRGRQNFIGPGFPGLKKRGHALGNRSWIKIEQSGNSKIVELDKATVMRHCSLPARDLRLLDPLFIYPSTILGREKAIVVSLEQIRCIITADEVFLMNSLDGSVVQYKSELSKRLQEEKCHSDDLPFEFRALELALEFTCLTLDTQVKELEMEIHPVLDELAKSISTLNLERVRRFKGHLLALTQRVQKVCDEIEHLMNDDGDMAEMYLTEKKQRNSCPDLYDQVQGSISVGPGPGPAVGMGSKSAPVSPVGSTSDAQKLQRAFSNISAHKHGSLLSSSVTGETENIDQLEMLLEAYFVGIDNTLNKLLSLKEYIDDTEDLINIKLGNVQNKLIKFELLLTAATFLATVFAVVTAVFGMNFEDEVFDEPNRFNWVVSISASLCGVLYICFLFYFKHKKVFPL | 428 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cich2g01173 | 428 | Gene3D | Magnesium transport protein CorA, transmembrane region | 128 | 359 | - | - | |
| Cich2g01173 | 428 | CDD | Mrs2-Mfm1p-like | 54 | 425 | IPR039204 | - | |
| Cich2g01173 | 428 | Pfam | Magnesium transporter MRS2-like | 63 | 242 | - | - | |
| Cich2g01173 | 428 | Gene3D | Magnesium transport protein CorA, transmembrane region | 366 | 424 | - | - | |
| Cich2g01173 | 428 | PANTHER | RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL | 39 | 425 | IPR039204 | GO:0015095(PANTHER)|GO:0015693(PANTHER) | |
| Cich2g01173 | 428 | FunFam | Magnesium transporter MRS2-1 | 41 | 125 | - | - | |
| Cich2g01173 | 428 | Gene3D | - | 45 | 125 | - | - | |
| Cich2g01173 | 428 | SUPERFAMILY | Magnesium transport protein CorA, transmembrane region | 365 | 417 | IPR045863 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cich2g01173 | K16075 | magnesium transporter |
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| 1640989 | Cich | Cich2g01173 | Cich-Chr2:39246250 | Cich3g02722 | Cich-Chr3:51164607 | |
| 1667261 | Cich | Cich2g01173 | Cich-Chr2:39246250 | Cich5g01006 | Cich-Chr5:17947635 |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Cich9g00171 | ACH | 1 | 442 | MRS2 gene family | AT1G16010 | 79.688 | 0.0 | 694.0 | |
| Cich8g02931 | . | 1 | 436 | MRS2 gene family | AT3G58970 | 66.452 | 0.0 | 568.0 | |
| Cich8g02993 | . | 177 | 264 | MRS2 gene family | AT5G22830 | 67.045 | 7.02e-35 | 124.0 | |
| Cich7g00211 | ACH | 47 | 417 | MRS2 gene family | AT3G19640 | 61.741 | 1.01e-145 | 422.0 | |
| Cich7g01706 | . | 208 | 262 | MRS2 gene family | AT5G22830 | 63.636 | 2.10e-19 | 83.2 | |
| Cich6g01602 | . | 123 | 459 | MRS2 gene family | AT5G22830 | 79.228 | 0.0 | 525.0 | |
| Cich5g01006 | ACH | 1 | 442 | MRS2 gene family | AT1G16010 | 83.221 | 0.0 | 727.0 | |
| Cich4g00331 | . | 1 | 385 | MRS2 gene family | AT5G09690 | 65.57 | 2.41e-178 | 499.0 | |
| Cich4g03564 | . | 1 | 436 | MRS2 gene family | AT3G58970 | 66.452 | 0.0 | 567.0 | |
| Cich4g03567 | . | 44 | 436 | MRS2 gene family | AT3G58970 | 70.343 | 0.0 | 563.0 | |
| Cich4g03572 | . | 44 | 431 | MRS2 gene family | AT3G58970 | 69.479 | 0.0 | 545.0 | |
| Cich3g02722 | ACH | 1 | 443 | MRS2 gene family | AT1G80900 | 77.455 | 0.0 | 667.0 | |
| Cich2g00423 | . | 132 | 339 | MRS2 gene family | AT5G22830 | 57.82 | 6.56e-69 | 222.0 | |
| Cich2g01173 | . | 1 | 421 | MRS2 gene family | AT2G03620 | 64.516 | 6.79e-177 | 499.0 | |
| Cich2g02197 | . | 180 | 262 | MRS2 gene family | AT5G22830 | 68.675 | 2.73e-35 | 124.0 | |
| Cich2g03421 | . | 179 | 297 | MRS2 gene family | AT5G22830 | 63.866 | 9.91e-45 | 163.0 | |
| Cich2g04067 | . | 47 | 483 | MRS2 gene family | AT3G19640 | 63.063 | 1.23e-178 | 507.0 | |
| Cich2g04667 | . | 176 | 297 | MRS2 gene family | AT5G22830 | 59.016 | 1.41e-44 | 151.0 | |
| Cich1g01488 | ACH | 47 | 484 | MRS2 gene family | AT3G19640 | 67.686 | 0.0 | 572.0 | |
| Cich1g03070 | . | 78 | 115 | MRS2 gene family | AT5G64560 | 57.895 | 5.05e-08 | 48.1 | |
| Cich1g03108 | . | 1 | 386 | MRS2 gene family | AT5G09690 | 72.938 | 0.0 | 556.0 | |
| Cich1g04900 | . | 176 | 262 | MRS2 gene family | AT5G22830 | 66.667 | 1.59e-34 | 125.0 |