AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cich2g01180 ATGGCCATGGAAGAAGAAATTGACACGGTGAAGTCTCAAATGGTAGTTGAAGAATGGAGTGGGACTTCTTCGAACAAACTCTCATTGACGACGATTATATCTCCGTCTTCTTCTCCTTCGTCTTTCGCCTTGAAAAGACATGGCAATCGATTCAACCTTTTCTCCCGAAGGTTCCTCGAGGCATTTGTTCCTGAGTCTGAAGCTGGTTGTCATTCAAGTCAACTGTTGTCGTTAGAAGAGAATCAGGATCCCCTCGAACGATTGATTAGAGAGTCAAAATCTGCCGAAGAAGTCGATCGTTCGGCGGCCATGGAAGAAATCGACAAGGTGAAGTCTCAAATGGTAGTTGAAGAATGGAGTGGGACTTCTTCGAACAAACTCTCGTTGACGGCCGTTATATCGCCGTCTTCTTCTCCTTCGTCTTTCGCCTTGAAAAGACATGGCAGTCGATTCATCCTTTTCTCCCGAAGGTTCCTCGAGGCATTTGTTCCTGAGGGGTTTCCAAGTAGTGTGACTCCAGATTACACCCCTTTTCAGACATGGGATTTATTGCAGGGCCTTTCAACATACATAAGGACCATGCTCTCTACACAAGCTCTTTTAAGTGCTATAGGAGTTGGTGAGAAATCAGCAACTGTAATTGGGGCTACTTTTCAGTGGTTTTTGAGGGATTTAACTGGAATGCTTGGAGGTGTTATGTTCACATTCTACCAGGGCTCAAATCTAGACAGCAATGCCAAAATGTGGCGTCTGGTTGCTGATCTTATGAATGATCTTGGAATGCTGATGGACCTTTTATCTCCATTGTTCCCTTCCGCCTTTCTATTCATTGTCTGCATAGGAAGCTTATCAAGATCTTTCACTGGTGTTGCCAGTGGTGCAACTAGAGCTGCTTTGACCCAACATTTTGCCCTTCAGAATAATGCAGCAGATATATCTGCAAAGGAAGGAAGTCAGGAAACAGTGGCAACAATGATTGGAATGGCTTTAGGAATGCTTCTTGCACAAATTACAATTGGACACTCTTTTATCATATGGTTCTCTTTTTTGTCCCTCACAATGTTCCACATGTATGCTAATTACAAAGCTGTTAGATGCCTTAATTTAACTACATTAAACTGTGAAAGAAGCTCAATTCTTTTGCAGCATTTCATGGACACCAGTGAAGTTCTGTCTCCAAAAGAGGTCTCAATTTTAGAGCATGTATTACCATTATGGATTAGTTCTTGGAGTTTAAAAAGTACAAAATCTTTGTATACACGCGTACGCTTAGGTGTCAGGGTTTCCTCATTTAACACCCTGGAAATGAAGGAGCTATTAAGTTATGCTGGATCTCAATACGAGAAAGGAAAATACTTGCTACTTGAGAAAAAAGGAATTGTGAGCATTGTTATGCATAAAGATTCAAAAACTGGAGATGTGATGCAGGGGTTTATTCATGCTCTTGTTATGGTCAATTTTTTAGATCTAAACCCTAAATCATCATTACATATGGACAGCCAAACATGGATGAACAAAAACTATCAAGACTTTATTTTGAAGCTTCAATCGTGTGGTTGGAAAACAGAGCGCCTTTTATCATCATCAATCATTTGGAGGGCAAACTGGACAAATGGGCCTCCAAATAAAAAGATAAATTAA 1641 40.89 MAMEEEIDTVKSQMVVEEWSGTSSNKLSLTTIISPSSSPSSFALKRHGNRFNLFSRRFLEAFVPESEAGCHSSQLLSLEENQDPLERLIRESKSAEEVDRSAAMEEIDKVKSQMVVEEWSGTSSNKLSLTAVISPSSSPSSFALKRHGSRFILFSRRFLEAFVPEGFPSSVTPDYTPFQTWDLLQGLSTYIRTMLSTQALLSAIGVGEKSATVIGATFQWFLRDLTGMLGGVMFTFYQGSNLDSNAKMWRLVADLMNDLGMLMDLLSPLFPSAFLFIVCIGSLSRSFTGVASGATRAALTQHFALQNNAADISAKEGSQETVATMIGMALGMLLAQITIGHSFIIWFSFLSLTMFHMYANYKAVRCLNLTTLNCERSSILLQHFMDTSEVLSPKEVSILEHVLPLWISSWSLKSTKSLYTRVRLGVRVSSFNTLEMKELLSYAGSQYEKGKYLLLEKKGIVSIVMHKDSKTGDVMQGFIHALVMVNFLDLNPKSSLHMDSQTWMNKNYQDFILKLQSCGWKTERLLSSSIIWRANWTNGPPNKKIN 546
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cich2g01180 546 PANTHER RUS1 FAMILY PROTEIN C16ORF58 111 535 IPR006968 -
Cich2g01180 546 Pfam Vitamin B6 photo-protection and homoeostasis 155 387 IPR054549 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cich2g01180 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cich Cich-Chr2:39319596 Cich3g04030 Cich-Chr3:82375889 dispersed
Cich Cich-Chr2:39319596 Cich2g05027 Cich-Chr2:156352503 transposed