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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cich4g03977 ATGGCGAATTATGGCATTCACGGCGGTCTCCTTGAAGTCACTGTTGTTAGCTGCAATAAACTGAAAGATACGGAATGGATCTCAAGGCAAGATCCTTACGTTCATATTGAATACGGTAGCAACAAATCTTCCACCCGTACCTGTAAAGATGGAGGCAAGAACCCTACATTTCAAGAGAAATTCGTGTACAGCCTAATTGAAGGACTAAGAGAGCTGAATGTTACGGTTTGGAATAGCAATACAATCACACACGATGACTTCATCGGTAGTGGAAAGATTCCATTATCAAAGGTATTTTCTCAAGGATTTGACGATAGTAGCTGGCCGTTACAAAGTAAAACTGGCAGGCATGCCGGAGAGGTTCGATTGATAATGCATTATTCCAATTCCAATTCCGTACAGAAACCTGCAAACGATTATGCTCAGAAACCATCAAAAGGTATTGCTCCATCGGCCCCACCGTATGTACCCGAGGGTGCACCCCCGCCGTCGATGTACTCTGCACCACCGCCATCTATGTACGCTGCTCATCCACCACCGTCTATGTACTCTGCACCACCACCGGCGGCTTACCCTCCACCATCTTCCTACCCCTCTTATCCACCTAATTCTGGTGTTTATCCACCGGCGCCATACCCACCTCAGGCAGCCCCTTATCCACCTCCGCCGTACCCACCAAATTCAGATTATGGATCACATTATCCCCAGGGGTCTCCATACCCAGGAATGTATCCACCACCACCATATTGA 750 47.6 MANYGIHGGLLEVTVVSCNKLKDTEWISRQDPYVHIEYGSNKSSTRTCKDGGKNPTFQEKFVYSLIEGLRELNVTVWNSNTITHDDFIGSGKIPLSKVFSQGFDDSSWPLQSKTGRHAGEVRLIMHYSNSNSVQKPANDYAQKPSKGIAPSAPPYVPEGAPPPSMYSAPPPSMYAAHPPPSMYSAPPPAAYPPPSSYPSYPPNSGVYPPAPYPPQAAPYPPPPYPPNSDYGSHYPQGSPYPGMYPPPPY 249
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cich4g03977 249 PANTHER CONSERVED SERINE PROLINE-RICH PROTEIN (AFU-ORTHOLOGUE AFUA-2G01790) 10 249 IPR052981 -
Cich4g03977 249 CDD C2 11 108 - -
Cich4g03977 249 Pfam C2 domain 9 101 IPR000008 -
Cich4g03977 249 MobiDBLite consensus disorder prediction 217 249 - -
Cich4g03977 249 Gene3D C2 domain 8 129 IPR035892 -
Cich4g03977 249 ProSiteProfiles C2 domain profile. 1 109 IPR000008 -
Cich4g03977 249 SMART C2-3c 10 107 IPR000008 -
Cich4g03977 249 MobiDBLite consensus disorder prediction 132 156 - -
Cich4g03977 249 SUPERFAMILY C2 domain (Calcium-lipid-binding domain, CaLB) 3 129 IPR035892 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cich4g03977 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
60562 Cich1g01603 Cich4g03977
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cich Cich-Chr4:117497243 Cich7g00260 Cich-Chr7:7768376 dispersed
Cich Cich-Chr1:32326862 Cich4g03977 Cich-Chr4:117497243 wgd