AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cich4g03992 ATGGAGAAAATCATATGCAGGTGTAGTGTGTTATCCAATGTGTTATTCGCGACTATCCTCATCACGGTTTTCGCTTGCAACTACGCTGCAGCACTCAAGGAAGGACAGACGTGCGTAAATAATAACAACTGTGACTCAGGGTTACATTGCGAGGCTTGCGTCGCAGACGGCAATGTTCGTCCTCGGTGTACTCGCCTTCAGCCTCTCAGCCCTTTTTCTAAGGTGAAAGGATTGCCATTCAATCGGTACTCGTGGTTGACGACGCACAATTCGTTTGCTAGATTGGGAGAAAGGTCAGATACAGGCTCTGTTGTTCTAGCTCCGACGAATCAGCAGGATTCTGTTAGTTCTCAGCTCGATAATGGTGTGAGAGGTTTGATGCTTGATATGTATGACTTTGAGAATGACATTTGGTTATGCCATTCCTTTGGTGGCAAATGCTTTAACTACACAGCTTTTCAACCTGCCATTAATGTTTTGATAGAGATTCGGGAGTTTTTGGAAAAGAATCCTACTGAAATCATCACTATAATCATTGAAGATTATGTTACATCTCAAAATGGATTAACTAATGTCTTCAACAATGCTGGTTTGAGAAAATTCTGGTTTCCAGTAGCTCGAATGCCTAACAATGGTGGCGATTGGCCCACGGTTGACTTTATGGTCAAACAAAATTTTCGGTTGGTGGTTTTCACTTCAAAAGCTGCTAAAGAACGTACAGAAGGAATCGCGTATCAATGGAAATACATGGTGGAAAACCAATATGGAACAGACGGGATGAAAAGCGGATTATGTCCAAACCGCGCGGAATCCCCCACTATGAACGTTACATCAAGGTCACTCGTTTTAATGAACTATTTTCCCGATACCCCGGATTTTACCCAAGCCTGCAAGCATAATTCGGCTCCATTAATTGACATGATGAACACATGCCATGATCTAGACCGTAAAAGGTGGCCTAATTTCATTGCTGTCGACTTCTACAAGAGGAGTAATGGCGGGGGTGCACCTGATGCTGTAGATATGGCTAATGGACAGCTAGTTTGTGGTTGTAACAGCATTTCAGTATGCAGGCCAAATATGACGTTTGGAGAGTGTAATATCCCGGCGGCAGAATCTGCTCCGGTGACCACCGGCGGAGGGAAAAGCGGGGCGGAGACGGGTGGTCAACCAGTAAGATTCGGGTGGTTGTTTGGGTCGGGTTTGGTGGCTTTGACCTTGTCTTCGTAA 1230 44.88 MEKIICRCSVLSNVLFATILITVFACNYAAALKEGQTCVNNNNCDSGLHCEACVADGNVRPRCTRLQPLSPFSKVKGLPFNRYSWLTTHNSFARLGERSDTGSVVLAPTNQQDSVSSQLDNGVRGLMLDMYDFENDIWLCHSFGGKCFNYTAFQPAINVLIEIREFLEKNPTEIITIIIEDYVTSQNGLTNVFNNAGLRKFWFPVARMPNNGGDWPTVDFMVKQNFRLVVFTSKAAKERTEGIAYQWKYMVENQYGTDGMKSGLCPNRAESPTMNVTSRSLVLMNYFPDTPDFTQACKHNSAPLIDMMNTCHDLDRKRWPNFIAVDFYKRSNGGGAPDAVDMANGQLVCGCNSISVCRPNMTFGECNIPAAESAPVTTGGGKSGAETGGQPVRFGWLFGSGLVALTLSS 409
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cich4g03992 409 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 26 - -
Cich4g03992 409 PANTHER UNCHARACTERIZED 41 357 IPR051057 GO:0008081(PANTHER)
Cich4g03992 409 SUPERFAMILY PLC-like phosphodiesterases 77 348 IPR017946 GO:0006629(InterPro)|GO:0008081(InterPro)
Cich4g03992 409 Gene3D Phosphatidylinositol (PI) phosphodiesterase 70 341 IPR017946 GO:0006629(InterPro)|GO:0008081(InterPro)
Cich4g03992 409 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 79 185 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cich4g03992 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
60572 Cich1g01634 Cich4g03992
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cich Cich-Chr3:145871673 Cich4g03992 Cich-Chr4:117835241 dispersed
Cich Cich-Chr3:145942707 Cich4g03992 Cich-Chr4:117835241 dispersed
Cich Cich-Chr5:59175207 Cich4g03992 Cich-Chr4:117835241 transposed
Cich Cich-Chr6:30058174 Cich4g03992 Cich-Chr4:117835241 transposed
Cich Cich-Chr1:33043033 Cich4g03992 Cich-Chr4:117835241 wgd