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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cich4g04020 ATGGATTCCAACAAGCAAACCTTCGTGGAACAAGATTCAGAGATGAAGCAAAATCTGCCATCTGACAAGAAGAAGAAGAGAAAGAAGACTCCGAAAGAGACTTGTGAAGCTAAATCCAAAGATAAACAGATTGTATCAGATAAGCCCAAGAAAGCATCTGGTAAGGGAAAAAGAACAAAAGTTTGTGACATTTATAATGATGCGGAAGATCAATATATGTGTATGGAAAGAGCAGCAATTTTATTGGAACGTTTAGATGCAGACTCACCTAAATTTGCCAAATGTATGCTTCCATCAAATGTTCTCTACAGTTTTTGGTTGATTTTACCGAAGAAATTTTGTGTTATGCATTTGCCTGAACATGATACGACAATTACTCTTGTGGATGAATCTGGAAAGGAATATAAGACAAATTATTTGAAAGTAAGACATGGATTAAGTGCTGGATGGAGGGGATTTTCTATTGCTCAAAGATTACTTCAGGGTGATATTTTGTTTTTTCATCTTGTTGAACCGTGTAAACTTCAGGTGAATATAGTGAGAAGATATGGTCTAGAAACAATAGAAGCAGCTGTTTGTCTAATGGAAATGCATCCTCGTGTTAAAAAAACAAGGACATCAAATTACTTTGATAAAGTGGCGGAACCTAAGAAAGAAAAACTTAAGCATAAAGAAGTTAAAGAAGAAGAACAAGAAGATAAACCAAAGAACCGAATCCAAGTGCTTGCACAAACAAAAAAAGGTAAAAGAACACGAAGAAGCCCAAAGAAGTTTATAGAACGATTGTCACTAGATTTTTGTACAAATCAAGAAAATGTTGAAGAAGATGGTGAAAGGGCATCGTGTGTTGACCATTGTGATGACATCAGCGATGGGTTGAGTTCAGAAGTTGTTCAAGGGTCAGTGTCAGAAATGACAAATCAATCACGACCTGATGAGGTTGGGTCTTGTGCACTGAATCTTGGCTACCATGAGGGCAATATCGACATTCATTCAACTGCCCGAAGAATATTTCATTCTTCAACAGTCGCAACATGA 1038 36.71 MDSNKQTFVEQDSEMKQNLPSDKKKKRKKTPKETCEAKSKDKQIVSDKPKKASGKGKRTKVCDIYNDAEDQYMCMERAAILLERLDADSPKFAKCMLPSNVLYSFWLILPKKFCVMHLPEHDTTITLVDESGKEYKTNYLKVRHGLSAGWRGFSIAQRLLQGDILFFHLVEPCKLQVNIVRRYGLETIEAAVCLMEMHPRVKKTRTSNYFDKVAEPKKEKLKHKEVKEEEQEDKPKNRIQVLAQTKKGKRTRRSPKKFIERLSLDFCTNQENVEEDGERASCVDHCDDISDGLSSEVVQGSVSEMTNQSRPDEVGSCALNLGYHEGNIDIHSTARRIFHSSTVAT 345
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cich4g04020 345 CDD B3-DNA 90 181 IPR003340 GO:0003677(InterPro)
Cich4g04020 345 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 15 182 IPR044837 -
Cich4g04020 345 SMART B3-2 92 183 IPR003340 GO:0003677(InterPro)
Cich4g04020 345 MobiDBLite consensus disorder prediction 1 15 - -
Cich4g04020 345 MobiDBLite consensus disorder prediction 32 56 - -
Cich4g04020 345 Gene3D - 71 183 IPR015300 -
Cich4g04020 345 Pfam B3 DNA binding domain 92 182 IPR003340 GO:0003677(InterPro)
Cich4g04020 345 ProSiteProfiles B3 DNA-binding domain profile. 92 183 IPR003340 GO:0003677(InterPro)
Cich4g04020 345 SUPERFAMILY DNA-binding pseudobarrel domain 86 182 IPR015300 -
Cich4g04020 345 MobiDBLite consensus disorder prediction 1 56 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cich4g04020 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cich Cich-Chr4:118327765 Cich8g01340 Cich-Chr8:40506333 dispersed
Cich Cich-Chr4:118327765 Cich4g04022 Cich-Chr4:118387788 proximal
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cich9g00137 ACH 264 398 B3 DNA Binding Superfamily AT2G30470 47.794 2.92e-35 131.0
Cich9g00301 . 572 624 B3 DNA Binding Superfamily AT3G24650 57.407 3.10e-10 60.1
Cich9g00687 . 120 182 B3 DNA Binding Superfamily AT1G19850 68.254 5.64e-22 92.8
Cich9g01195 . 230 343 B3 DNA Binding Superfamily AT1G19850 71.552 1.51e-42 151.0
Cich9g01450 ACH 13 581 B3 DNA Binding Superfamily AT2G46530 61.889 0.0 692.0
Cich9g01453 . 499 555 B3 DNA Binding Superfamily AT3G61830 78.947 4.60e-27 102.0
Cich9g02284 . 92 163 B3 DNA Binding Superfamily AT2G28350 63.014 9.13e-24 100.0
Cich8g00381 . 268 366 B3 DNA Binding Superfamily AT4G30080 62.626 1.15e-38 135.0
Cich8g00687 ACH 26 170 B3 DNA Binding Superfamily AT1G49475 31.081 1.77e-08 50.4
Cich8g01268 . 120 182 B3 DNA Binding Superfamily AT1G19850 68.254 1.67e-21 92.8
Cich8g01340 . 112 222 B3 DNA Binding Superfamily AT3G19184 49.55 3.43e-33 124.0
Cich8g01394 . 4 107 B3 DNA Binding Superfamily AT5G66980 41.905 2.93e-19 85.9
Cich8g01731 ACH 45 313 B3 DNA Binding Superfamily AT3G26790 41.758 9.97e-59 189.0
Cich8g02116 . 135 216 B3 DNA Binding Superfamily AT1G19850 73.171 2.80e-34 138.0
Cich8g02624 . 157 204 B3 DNA Binding Superfamily AT5G20730 64.583 1.70e-15 73.2
Cich7g00710 ACH 278 385 B3 DNA Binding Superfamily AT4G32010 50.459 1.43e-31 119.0
Cich7g01876 . 256 342 B3 DNA Binding Superfamily AT1G19850 79.31 5.01e-38 138.0
Cich7g01974 ACH 1 463 B3 DNA Binding Superfamily AT1G19220 78.28 0.0 729.0
Cich7g02309 . 1 464 B3 DNA Binding Superfamily AT1G30330 86.681 0.0 839.0
Cich7g02472 ACH 1 563 B3 DNA Binding Superfamily AT2G33860 49.414 1.39e-170 498.0
Cich7g02587 . 3 516 B3 DNA Binding Superfamily AT4G32010 42.549 1.49e-122 382.0
Cich7g02840 . 1 293 B3 DNA Binding Superfamily AT1G01030 42.319 2.05e-68 222.0
Cich7g02932 ACH 1 614 B3 DNA Binding Superfamily AT4G23980 61.069 0.0 700.0
Cich6g00511 . 591 648 B3 DNA Binding Superfamily AT3G24650 74.138 8.84e-26 102.0
Cich6g00528 . 591 640 B3 DNA Binding Superfamily AT3G24650 75.0 1.51e-21 87.4
Cich6g00945 . 1 670 B3 DNA Binding Superfamily AT4G30080 57.602 0.0 700.0
Cich6g01512 ACH 62 772 B3 DNA Binding Superfamily AT5G60450 54.714 0.0 744.0
Cich6g01537 . 2 693 B3 DNA Binding Superfamily AT2G28350 55.775 0.0 706.0
Cich6g01680 ACH 114 212 B3 DNA Binding Superfamily AT3G26790 46.465 2.27e-23 92.8
Cich6g02117 . 572 648 B3 DNA Binding Superfamily AT3G24650 64.103 1.27e-25 105.0
Cich6g02472 . 287 361 B3 DNA Binding Superfamily AT2G28350 72.0 1.12e-32 118.0
Cich6g03309 . 221 367 B3 DNA Binding Superfamily AT4G30080 54.605 2.64e-44 153.0
Cich6g03762 . 218 363 B3 DNA Binding Superfamily AT4G30080 54.967 1.38e-46 160.0
Cich6g03841 . 4 895 B3 DNA Binding Superfamily AT1G19850 58.315 0.0 972.0
Cich5g00603 . 1 221 B3 DNA Binding Superfamily AT3G19184 54.386 5.91e-70 214.0
Cich5g00912 . 110 167 B3 DNA Binding Superfamily AT4G30080 72.131 5.07e-22 90.5
Cich5g00961 . 1 808 B3 DNA Binding Superfamily AT5G62000 57.565 0.0 847.0
Cich5g04258 . 257 445 B3 DNA Binding Superfamily AT4G32010 47.917 1.07e-47 179.0
Cich5g04350 . 752 838 B3 DNA Binding Superfamily AT1G19850 60.215 1.24e-21 89.4
Cich4g00169 . 53 393 B3 DNA Binding Superfamily AT5G62000 41.108 1.59e-74 245.0
Cich4g00471 . 431 713 B3 DNA Binding Superfamily AT3G24650 56.757 7.77e-94 306.0
Cich4g00649 . 4 221 B3 DNA Binding Superfamily AT5G58280 51.77 1.84e-71 220.0
Cich4g00656 . 302 374 B3 DNA Binding Superfamily AT1G19850 68.493 1.54e-28 113.0
Cich4g00668 . 1 672 B3 DNA Binding Superfamily AT4G32010 48.619 0.0 657.0
Cich4g00944 . 279 313 B3 DNA Binding Superfamily AT5G20730 51.429 6.11e-07 45.4
Cich4g02360 . 1 379 B3 DNA Binding Superfamily AT4G30080 62.532 1.30e-163 476.0
Cich4g02811 . 207 351 B3 DNA Binding Superfamily AT4G30080 55.333 3.74e-46 157.0
Cich4g03477 . 1 664 B3 DNA Binding Superfamily AT1G59750 66.963 0.0 868.0
Cich4g03596 . 279 337 B3 DNA Binding Superfamily AT5G20730 66.102 5.82e-23 93.2
Cich4g04020 . 47 199 B3 DNA Binding Superfamily AT5G42700 40.385 1.88e-28 108.0
Cich4g04022 ACH 105 230 B3 DNA Binding Superfamily AT3G19184 56.349 4.79e-44 153.0
Cich3g00164 . 23 322 B3 DNA Binding Superfamily AT5G66980 23.175 5.64e-14 70.1
Cich3g00510 . 167 289 B3 DNA Binding Superfamily AT1G05930 25.581 9.87e-07 46.2
Cich3g00519 . 167 289 B3 DNA Binding Superfamily AT1G05930 34.109 3.35e-13 63.5
Cich3g00521 . 167 289 B3 DNA Binding Superfamily AT1G05930 31.008 2.80e-09 52.4
Cich3g00523 . 167 289 B3 DNA Binding Superfamily AT1G05930 31.298 5.60e-09 52.8
Cich3g01525 ACH 1 594 B3 DNA Binding Superfamily AT2G33860 47.428 3.21e-167 488.0
Cich3g01535 . 435 512 B3 DNA Binding Superfamily AT4G32010 53.165 9.37e-24 91.3
Cich3g01973 . 112 188 B3 DNA Binding Superfamily AT1G19850 66.234 4.08e-28 108.0
Cich3g02288 . 315 376 B3 DNA Binding Superfamily AT1G19220 77.419 1.11e-30 118.0
Cich3g02494 . 25 124 B3 DNA Binding Superfamily AT3G18960 33.0 5.53e-11 60.5
Cich3g03316 . 164 289 B3 DNA Binding Superfamily AT1G05930 32.331 9.32e-10 53.9
Cich2g02718 ACH 79 188 B3 DNA Binding Superfamily AT1G19850 53.153 3.06e-28 111.0
Cich1g00865 . 609 655 B3 DNA Binding Superfamily AT4G30080 46.809 1.09e-07 46.6
Cich1g01656 ACH 1 227 B3 DNA Binding Superfamily AT3G19184 58.696 3.26e-84 250.0
Cich1g02271 ACH 1 478 B3 DNA Binding Superfamily AT1G19220 79.498 0.0 783.0
Cich1g02801 . 284 361 B3 DNA Binding Superfamily AT2G28350 75.641 1.63e-34 127.0
Cich1g02910 . 14 58 B3 DNA Binding Superfamily AT5G20730 66.667 9.97e-15 65.9
Cich1g02911 . 14 58 B3 DNA Binding Superfamily AT5G20730 66.667 9.97e-15 65.9
Cich1g02912 . 53 155 B3 DNA Binding Superfamily AT1G19220 60.577 8.59e-34 121.0
Cich1g03743 ACH 62 772 B3 DNA Binding Superfamily AT5G60450 55.693 0.0 738.0
Cich1g04089 . 12 662 B3 DNA Binding Superfamily AT4G30080 55.325 0.0 671.0
Cich1g04965 ACH 15 583 B3 DNA Binding Superfamily AT2G46530 59.754 0.0 669.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Cich B3 5.5e-15 CL0405 TF B3