AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cich4g04025 ATGTTGACTAGCGGAGGAGGAGGAACGTTTTACTGGGTTCGAAATGAGGAGGAGACATCATCTTCATCGAAACTCGAAGGGATCGTTGTGGTTTTTGCTTGGGGTTCGCTTGAGGAGAGCCGGTTGAAGAATTTCGTGGATCTATATTCGTCTATTGGTTGGAACTCGCTTGTTGTTCTTTCCGATTTTCTCAATCCATTTTTTCCAGAGAGAGCCACGTCACTTGCATTTTCAATCCTCAATGAGCTTTTAGAGGAGTTGAGGACTAAACCATGTCCTTTAGTCCTTGCAGCCTTTTCTGGTGGTTCACAGGCTTGTATGTATAAGCTTCTTCAGATTATTGAAGGAACATGTGAAGCACATCTAAATCTGGATGATAGTCGATTAATCATGACATGTATCTCTGGTCAAATGTTTGACTCCGGTCCGGTCAACGTAACCGGTGATTTGGGTGCCCGGTTTGCCCTACAATCTTCAATTCTAAATCTTCCCGGTTCATCAAAATTAGTATCTTTATTTGCAAAAGGTGTCACTTCCGGATTGGACGCTTTATTTCTTACTAAATTCGGGTCCCACCGCTCTGAATACTGGCAAACACTCTACTCCTCTGTTGGTTTGGGCGCCCCATTTCTCATATTATGTTCGGAAAATGACGATCTTGCCCCTTATCCGGTTATATATTCGTTTGCTCAACGGGTACAAGGATTAGGGGGACATGTGAGGTTTATTAATTGGAAGGACTCTCCACATTTAGGTCACTACGAGTATAATCCAATTCAATACAGGACAGCTGTCACCAAATTTCTCGACCACTCTATTTCAATATTCAACCAAAAACTTCAAAAACTATTTGAAAGAAATGGTATGGAAGGTATGCACGACAAAATCTGCGAATTAATATGCGACCTTCAAAACGCCGCCGTTGACTCAAACCAAAGCCTTAGAAGAGTAGCAGTGGGGCCCACAGACCATTTCTTCTTGCCAAGTTCTTTAGAGTATCAAAACAATAAAGAATCAGGATCTTTACAAGATGAGCAAAAAGAAAGAAGAAGTGGTAGTGGTGTCCACGTGGCAAGTCCTCCAAGTTTGAGTCCACATAGTGTTCTTGGTCAAGTTCTTTTTGATGTTTGTGTCCCTAAGAATATTGAAGGGTGGGATATTAAGTTTGATGGGAAGACATTCGGGTCGGGTCGTAAAAGGTTGTCTTTGAATGGGTTGAAACGTATGAGAAGGTCAAGATTGTAA 1245 41.93 MLTSGGGGTFYWVRNEEETSSSSKLEGIVVVFAWGSLEESRLKNFVDLYSSIGWNSLVVLSDFLNPFFPERATSLAFSILNELLEELRTKPCPLVLAAFSGGSQACMYKLLQIIEGTCEAHLNLDDSRLIMTCISGQMFDSGPVNVTGDLGARFALQSSILNLPGSSKLVSLFAKGVTSGLDALFLTKFGSHRSEYWQTLYSSVGLGAPFLILCSENDDLAPYPVIYSFAQRVQGLGGHVRFINWKDSPHLGHYEYNPIQYRTAVTKFLDHSISIFNQKLQKLFERNGMEGMHDKICELICDLQNAAVDSNQSLRRVAVGPTDHFFLPSSLEYQNNKESGSLQDEQKERRSGSGVHVASPPSLSPHSVLGQVLFDVCVPKNIEGWDIKFDGKTFGSGRKRLSLNGLKRMRRSRL 414
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cich4g04025 414 PANTHER UNCHARACTERIZED 16 277 IPR008547 -
Cich4g04025 414 Pfam Eukaryotic protein of unknown function (DUF829) 134 385 IPR008547 -
Cich4g04025 414 SUPERFAMILY alpha-beta-Hydrolases 70 272 IPR029058 -
Cich4g04025 414 Gene3D alpha-beta hydrolase 147 283 IPR029058 -
Cich4g04025 414 MobiDBLite consensus disorder prediction 336 362 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cich4g04025 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cich Cich-Chr4:118406044 Cich9g02861 Cich-Chr9:83422416 dispersed
Cich Cich-Chr1:40699858 Cich4g04025 Cich-Chr4:118406044 transposed
Cich Cich-Chr4:127323365 Cich4g04025 Cich-Chr4:118406044 transposed
Cich Cich-Chr4:118406044 Cich5g00599 Cich-Chr5:11642793 wgd