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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cich4g04029 ATGCATGTGGAAGATTCTATGGGAAAATTGGAAACGGGTACAATCGGATTCGAAGGAACTGAAGTGGTTTTGGTGATGGAGGTTTCAAACTCGCAAGGAGACGTGCGGCGGAGTAGAGATACAGATGTTACGAGCTCCGGCACCGGTAAAGGAAGAAGACTAAATTCTCAAGATCAGCAGAATGCTTTTCAGCTTCAATGTCAGTGTCAAAGTGATAACCTTGACGTGAATTTCCGTGAAAATGTTTATTTGACAGCGGTTTCTGGTGATTCTGATTATGTTTCGTCGTTTACGTGCTCTATACATGACGATTCGAGACCACTTCTGAAGGCTGAGTGTCTTTCCGAAACCGAAATCTACATGTCCAGTAACGACGGTTTCAGTCAAGACACATCTGCATCAAGTGTGGTTTCCTTGGAAACAGAAGAAATGGAGTCGTTATCCACAACTCCTCCAAAGAAGAAGAAGACGCCGGCACGGGCAAACGAGGCTACTTCCCGTCGTAAACCACCATCACCGGCAAAGACTCCATCTCCGGCCGAGCTTGACGAATTTTTCTCTGAAGCGGAGAAGTACGAACAGAAACGCTTCGCAGAAAAGTACAACTATGATATCATGAAAGACGTTCCGACGAAAGGAAGGTACCAATGGGGTTATCTGTCTCTACATGACCATAATATTCCTGAACTCTCTTCTTACTTTTCTTCACCATTGGAAGCTTCTCCCTCTGCAACATAA 738 44.85 MHVEDSMGKLETGTIGFEGTEVVLVMEVSNSQGDVRRSRDTDVTSSGTGKGRRLNSQDQQNAFQLQCQCQSDNLDVNFRENVYLTAVSGDSDYVSSFTCSIHDDSRPLLKAECLSETEIYMSSNDGFSQDTSASSVVSLETEEMESLSTTPPKKKKTPARANEATSRRKPPSPAKTPSPAELDEFFSEAEKYEQKRFAEKYNYDIMKDVPTKGRYQWGYLSLHDHNIPELSSYFSSPLEASPSAT 245
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cich4g04029 245 Gene3D p27 172 240 IPR044898 -
Cich4g04029 245 Pfam Cyclin-dependent kinase inhibitor 177 217 IPR003175 GO:0004861(InterPro)|GO:0005634(InterPro)|GO:0051726(InterPro)
Cich4g04029 245 PANTHER CYCLIN-DEPENDENT KINASE INHIBITOR 4-RELATED 53 220 IPR044275 GO:0004861(InterPro)|GO:0045736(InterPro)|GO:0051726(InterPro)
Cich4g04029 245 MobiDBLite consensus disorder prediction 28 57 - -
Cich4g04029 245 MobiDBLite consensus disorder prediction 124 182 - -
Cich4g04029 245 MobiDBLite consensus disorder prediction 124 155 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cich4g04029 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cich Cich-Chr2:132124454 Cich4g04029 Cich-Chr4:118606442 dispersed
Cich Cich-Chr4:118432891 Cich4g04029 Cich-Chr4:118606442 dispersed
Cich Cich-Chr4:118606442 Cich6g02088 Cich-Chr6:29756954 dispersed
Cich Cich-Chr4:118497143 Cich4g04029 Cich-Chr4:118606442 proximal
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cich9g00200 . 18 357 Core Cell Cycle gene family AT5G10270 51.906 4.83e-115 350.0
Cich9g00352 . 18 370 Core Cell Cycle gene family AT5G10270 44.875 7.86e-102 318.0
Cich9g00556 . 2 316 Core Cell Cycle gene family AT4G37630 38.245 1.08e-52 173.0
Cich9g00748 ACH 70 338 Core Cell Cycle gene family AT2G22490 50.183 1.76e-79 245.0
Cich9g00864 . 21 368 Core Cell Cycle gene family AT5G10270 45.658 1.92e-100 312.0
Cich9g01031 . 1 459 Core Cell Cycle gene family AT1G44110 59.792 0.0 554.0
Cich9g01328 . 164 287 Core Cell Cycle gene family AT3G48750 34.507 1.37e-11 64.7
Cich9g01540 . 197 418 Core Cell Cycle gene family AT5G64960 33.929 4.14e-32 121.0
Cich9g01541 . 178 323 Core Cell Cycle gene family AT5G64960 36.301 2.09e-25 101.0
Cich9g01719 . 224 255 Core Cell Cycle gene family AT5G64960 59.375 2.17e-06 42.4
Cich9g01782 . 76 244 Core Cell Cycle gene family AT5G27620 25.0 9.71e-06 45.8
Cich9g02127 . 18 363 Core Cell Cycle gene family AT5G10270 51.585 3.03e-119 360.0
Cich9g02795 . 10 289 Core Cell Cycle gene family AT3G48750 42.553 2.67e-79 241.0
Cich9g02944 . 94 272 Core Cell Cycle gene family AT5G64960 43.575 3.90e-33 122.0
Cich8g00143 . 18 363 Core Cell Cycle gene family AT5G10270 52.161 8.13e-121 364.0
Cich8g00177 . 1 435 Core Cell Cycle gene family AT5G25380 49.007 4.28e-138 401.0
Cich8g01310 ACH 63 358 Core Cell Cycle gene family AT5G67260 50.0 7.41e-98 293.0
Cich8g02033 . 197 256 Core Cell Cycle gene family AT5G64960 56.667 1.24e-17 79.0
Cich8g02242 . 3 387 Core Cell Cycle gene family AT2G26760 53.155 9.35e-149 425.0
Cich8g02313 . 220 268 Core Cell Cycle gene family AT2G26760 67.347 8.81e-18 75.1
Cich8g02958 . 1 294 Core Cell Cycle gene family AT3G48750 73.469 2.10e-164 456.0
Cich8g02996 . 153 239 Core Cell Cycle gene family AT1G76540 50.575 2.54e-21 86.7
Cich7g00073 . 18 359 Core Cell Cycle gene family AT5G10270 52.464 3.76e-116 357.0
Cich7g01796 . 1 478 Core Cell Cycle gene family AT4G28980 55.28 0.0 520.0
Cich7g02387 . 10 290 Core Cell Cycle gene family AT3G48750 35.395 3.90e-56 185.0
Cich7g02669 . 197 229 Core Cell Cycle gene family AT5G10270 57.576 1.81e-06 48.5
Cich7g03183 . 148 230 Core Cell Cycle gene family AT2G38620 40.964 1.62e-13 65.9
Cich7g03404 . 112 433 Core Cell Cycle gene family AT5G06150 50.45 8.98e-101 303.0
Cich6g00016 . 207 248 Core Cell Cycle gene family AT1G20930 80.952 4.24e-18 74.3
Cich6g01361 . 1 217 Core Cell Cycle gene family AT5G25380 33.755 1.78e-27 110.0
Cich6g01940 . 18 149 Core Cell Cycle gene family AT5G64960 37.879 4.41e-24 102.0
Cich6g02088 . 150 193 Core Cell Cycle gene family AT1G49620 56.818 4.01e-13 63.9
Cich6g02179 . 14 306 Core Cell Cycle gene family AT1G20930 29.45 3.46e-41 149.0
Cich6g02197 . 12 304 Core Cell Cycle gene family AT1G76540 31.629 1.02e-41 148.0
Cich6g02209 . 7 314 Core Cell Cycle gene family AT4G37630 36.076 1.11e-52 174.0
Cich6g03915 . 257 288 Core Cell Cycle gene family AT1G76310 68.75 1.62e-09 50.4
Cich6g03934 . 175 248 Core Cell Cycle gene family AT1G18040 33.784 6.49e-06 44.7
Cich6g04167 . 19 430 Core Cell Cycle gene family AT1G76310 58.879 2.31e-169 481.0
Cich5g00041 ACH 9 302 Core Cell Cycle gene family AT5G65420 41.284 6.51e-71 221.0
Cich5g00046 . 30 82 Core Cell Cycle gene family AT5G10270 53.704 1.13e-09 52.0
Cich5g00217 . 1 38 Core Cell Cycle gene family AT5G64960 81.579 1.11e-15 67.4
Cich5g00333 . 18 357 Core Cell Cycle gene family AT5G10270 47.522 5.82e-104 324.0
Cich5g00681 ACH 1 353 Core Cell Cycle gene family AT5G43080 58.333 1.09e-149 425.0
Cich5g00752 . 18 364 Core Cell Cycle gene family AT5G10270 47.443 2.34e-108 332.0
Cich5g01895 . 14 304 Core Cell Cycle gene family AT1G76540 26.023 3.18e-28 111.0
Cich5g02150 . 1 80 Core Cell Cycle gene family AT2G27970 91.463 8.62e-53 160.0
Cich5g02598 . 207 275 Core Cell Cycle gene family AT5G64960 75.362 3.16e-32 118.0
Cich5g02673 . 157 239 Core Cell Cycle gene family AT1G20930 73.494 4.06e-38 128.0
Cich5g03284 . 155 239 Core Cell Cycle gene family AT1G20930 77.647 1.35e-42 139.0
Cich5g04300 . 3 296 Core Cell Cycle gene family AT4G03270 37.542 5.47e-51 168.0
Cich4g00007 . 6 391 Core Cell Cycle gene family AT1G18040 76.786 0.0 596.0
Cich4g01390 . 157 248 Core Cell Cycle gene family AT1G20930 69.565 7.67e-39 135.0
Cich4g01674 ACH 18 304 Core Cell Cycle gene family AT1G76540 28.939 2.52e-28 115.0
Cich4g01876 . 316 351 Core Cell Cycle gene family AT4G28980 50.0 1.17e-06 45.1
Cich4g02626 ACH 76 322 Core Cell Cycle gene family AT2G22490 47.791 4.02e-66 210.0
Cich4g03509 . 21 414 Core Cell Cycle gene family AT5G10270 46.154 1.04e-113 348.0
Cich4g03930 . 79 220 Core Cell Cycle gene family AT1G20930 76.056 1.11e-72 228.0
Cich4g03973 ACH 14 288 Core Cell Cycle gene family AT4G34160 53.633 3.00e-102 305.0
Cich4g04026 ACH 91 195 Core Cell Cycle gene family AT1G49620 44.444 2.24e-22 88.6
Cich4g04027 . 91 195 Core Cell Cycle gene family AT1G49620 44.828 1.82e-23 91.3
Cich4g04029 . 92 190 Core Cell Cycle gene family AT1G49620 44.954 4.11e-19 80.5
Cich4g04616 . 18 357 Core Cell Cycle gene family AT5G10270 54.839 5.36e-123 374.0
Cich4g04676 . 58 255 Core Cell Cycle gene family AT4G03270 32.353 2.35e-25 102.0
Cich4g04677 . 74 265 Core Cell Cycle gene family AT4G03270 23.737 7.67e-09 53.5
Cich3g00131 . 12 338 Core Cell Cycle gene family AT1G70210 58.967 8.32e-126 362.0
Cich3g00592 . 194 399 Core Cell Cycle gene family AT5G06150 29.665 3.47e-23 100.0
Cich3g01014 . 1 294 Core Cell Cycle gene family AT3G48750 86.735 0.0 538.0
Cich3g02015 . 18 368 Core Cell Cycle gene family AT5G10270 51.136 1.15e-118 363.0
Cich3g02129 . 1 285 Core Cell Cycle gene family AT4G03270 41.216 1.33e-66 208.0
Cich3g02467 . 19 304 Core Cell Cycle gene family AT1G76540 25.449 2.76e-27 108.0
Cich3g02513 . 3 289 Core Cell Cycle gene family AT3G48750 47.811 3.04e-86 268.0
Cich3g02621 . 18 357 Core Cell Cycle gene family AT5G10270 52.786 3.58e-118 358.0
Cich3g03234 . 19 459 Core Cell Cycle gene family AT1G80370 50.661 4.83e-143 415.0
Cich3g04008 . 132 173 Core Cell Cycle gene family AT1G73690 76.19 2.14e-17 73.2
Cich3g04010 . 18 286 Core Cell Cycle gene family AT4G34160 50.357 4.24e-85 259.0
Cich3g04046 ACH 14 363 Core Cell Cycle gene family AT1G47230 54.52 3.36e-140 400.0
Cich3g04242 . 20 376 Core Cell Cycle gene family AT5G10270 44.134 7.58e-92 290.0
Cich3g04840 . 12 304 Core Cell Cycle gene family AT1G76540 30.097 3.94e-40 144.0
Cich3g04875 ACH 1 365 Core Cell Cycle gene family AT5G67260 44.241 6.51e-99 296.0
Cich3g05107 . 18 357 Core Cell Cycle gene family AT5G10270 46.041 5.27e-104 322.0
Cich2g00009 . 12 46 Core Cell Cycle gene family AT1G76540 60.0 1.35e-07 50.1
Cich2g00491 . 11 315 Core Cell Cycle gene family AT1G20930 87.213 0.0 573.0
Cich2g00960 . 8 302 Core Cell Cycle gene family AT3G54180 25.519 1.52e-13 70.1
Cich2g00987 . 20 290 Core Cell Cycle gene family AT1G66750 30.159 9.95e-29 116.0
Cich2g02097 . 17 282 Core Cell Cycle gene family AT5G10270 51.103 9.27e-87 278.0
Cich2g04272 . 1 317 Core Cell Cycle gene family AT5G27620 60.502 1.07e-137 392.0
Cich2g04564 . 65 135 Core Cell Cycle gene family AT3G12280 38.158 4.58e-07 48.9
Cich2g04904 ACH 99 239 Core Cell Cycle gene family AT5G27620 28.667 2.81e-12 63.5
Cich2g04948 . 1 222 Core Cell Cycle gene family AT5G48820 43.852 5.11e-47 153.0
Cich2g05091 . 26 111 Core Cell Cycle gene family AT4G28980 69.767 4.00e-34 125.0
Cich2g05204 . 7 497 Core Cell Cycle gene family AT1G02970 57.143 0.0 553.0
Cich1g00060 . 18 94 Core Cell Cycle gene family AT5G10270 44.156 4.23e-14 73.2
Cich1g00240 ACH 99 239 Core Cell Cycle gene family AT5G27620 29.333 7.38e-11 59.7
Cich1g00274 . 277 323 Core Cell Cycle gene family AT5G10270 42.553 3.14e-06 45.4
Cich1g00487 . 1 294 Core Cell Cycle gene family AT3G48750 37.5 3.23e-68 215.0
Cich1g00488 . 1 294 Core Cell Cycle gene family AT3G48750 37.5 3.64e-68 215.0
Cich1g00774 . 1 445 Core Cell Cycle gene family AT5G06150 51.416 3.28e-152 437.0
Cich1g00801 . 4 237 Core Cell Cycle gene family AT5G02110 31.25 1.71e-31 120.0
Cich1g00815 . 2 309 Core Cell Cycle gene family AT3G54180 81.494 0.0 531.0
Cich1g00831 . 2 309 Core Cell Cycle gene family AT3G54180 81.494 0.0 531.0
Cich1g01219 . 20 312 Core Cell Cycle gene family AT1G76540 34.237 7.58e-56 184.0
Cich1g01491 . 52 296 Core Cell Cycle gene family AT1G70210 42.972 1.92e-59 192.0
Cich1g01545 . 28 362 Core Cell Cycle gene family AT1G47230 47.761 1.34e-107 318.0
Cich1g01601 ACH 87 280 Core Cell Cycle gene family AT4G34160 61.856 3.37e-86 260.0
Cich1g01659 ACH 91 195 Core Cell Cycle gene family AT1G49620 44.86 4.24e-19 80.1
Cich1g03073 . 18 470 Core Cell Cycle gene family AT5G63610 77.391 0.0 717.0
Cich1g05013 . 3 301 Core Cell Cycle gene family AT3G54180 28.406 5.71e-29 113.0
Cich1g05039 . 1 425 Core Cell Cycle gene family AT5G25380 50.441 4.60e-140 409.0
Cich1g05165 . 1 294 Core Cell Cycle gene family AT3G48750 37.248 2.38e-67 215.0