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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cich4g04036 ATGGCTATCCGGGTCGGGTCAGAAACTTCGAGAGTGAGCATAAACCTACAGGGAATTATCCTGCTTCATCCGTATTTTTGGGGAGAAGATCGAATAGGGTCTGAAGGCGAACACCCATGGAAGTCATTCGTGGACGGGGTATGGATCTTTGCCTACCCGGGAACAAGTGGGTTGGATGACCCGTTGATTAACCCGGATAAGGATCCGAAAGTGTCGGATCTTGGATGCTCCAGGGTACTGGTTTGTGTTGCTGATAAGGATATTTTGAAGGATAGGGGATGGTATTATAAGGTTATTTTGGGTAAAAATGGTTGGAAAGGAGATATTGAGGTTATTGAGGATAAAGGGGAGAACCATGCGTTTTTCCTATTACACCCTTCATCAGTTAATGCTGGGTTTCAAAATGTACTCCTTAGTTCAAATTTCCTAATTTCTCCTGCTATCTAA 447 43.85 MAIRVGSETSRVSINLQGIILLHPYFWGEDRIGSEGEHPWKSFVDGVWIFAYPGTSGLDDPLINPDKDPKVSDLGCSRVLVCVADKDILKDRGWYYKVILGKNGWKGDIEVIEDKGENHAFFLLHPSSVNAGFQNVLLSSNFLISPAI 148
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cich4g04036 148 SUPERFAMILY alpha-beta-Hydrolases 12 127 IPR029058 -
Cich4g04036 148 Pfam alpha-beta hydrolase fold 13 122 IPR013094 GO:0016787(InterPro)
Cich4g04036 148 Gene3D alpha-beta hydrolase 1 137 IPR029058 -
Cich4g04036 148 PANTHER ARYLACETAMIDE DEACETYLASE 1 128 IPR050466 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cich4g04036 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cich Cich-Chr4:118739597 Cich4g04042 Cich-Chr4:118794235 dispersed
Cich Cich-Chr4:118674783 Cich4g04036 Cich-Chr4:118739597 proximal
Cich Cich-Chr4:118739597 Cich4g04040 Cich-Chr4:118761380 proximal
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cich9g01202 ACH 53 213 Carbohydrate Esterase gene family AT3G14310 27.439 5.48e-17 76.6
Cich9g01204 . 62 218 Carbohydrate Esterase gene family AT1G53830 25.786 6.23e-16 73.2
Cich9g01618 . 21 152 Carbohydrate Esterase gene family AT1G19190 43.796 3.60e-32 114.0
Cich9g01710 . 4 389 Carbohydrate Esterase gene family AT4G19420 61.24 0.0 531.0
Cich9g01712 . 3 389 Carbohydrate Esterase gene family AT4G19420 62.564 0.0 541.0
Cich9g01930 . 3 375 Carbohydrate Esterase gene family AT4G19420 53.175 1.46e-151 432.0
Cich9g02637 . 22 332 Carbohydrate Esterase gene family AT1G68620 38.871 4.23e-70 219.0
Cich9g03086 . 5 561 Carbohydrate Esterase gene family AT3G10710 55.009 0.0 635.0
Cich8g00752 . 50 259 Carbohydrate Esterase gene family AT2G41530 79.621 6.52e-126 361.0
Cich8g00774 . 26 324 Carbohydrate Esterase gene family AT1G24793 56.856 5.60e-126 361.0
Cich8g01516 . 1 315 Carbohydrate Esterase gene family AT1G19190 46.875 1.21e-95 284.0
Cich8g02752 . 14 511 Carbohydrate Esterase gene family AT2G45220 66.535 0.0 702.0
Cich8g02753 . 14 511 Carbohydrate Esterase gene family AT2G45220 66.535 0.0 703.0
Cich8g02758 . 14 511 Carbohydrate Esterase gene family AT2G45220 60.99 0.0 639.0
Cich8g02761 ACH 56 220 Carbohydrate Esterase gene family AT1G53830 29.825 2.38e-14 69.3
Cich8g02843 . 14 511 Carbohydrate Esterase gene family AT2G45220 66.535 0.0 704.0
Cich8g02844 . 14 511 Carbohydrate Esterase gene family AT2G45220 66.339 0.0 702.0
Cich8g02862 . 58 301 Carbohydrate Esterase gene family AT1G68620 33.597 1.26e-42 148.0
Cich7g00276 . 4 325 Carbohydrate Esterase gene family AT3G48700 41.925 4.60e-82 250.0
Cich7g01087 . 2 415 Carbohydrate Esterase gene family AT3G05910 64.988 0.0 587.0
Cich7g01122 . 2 326 Carbohydrate Esterase gene family AT3G48700 39.818 3.17e-83 254.0
Cich7g01123 . 156 324 Carbohydrate Esterase gene family AT3G48700 36.628 8.84e-34 120.0
Cich7g01124 . 156 324 Carbohydrate Esterase gene family AT3G48700 36.628 1.68e-33 120.0
Cich7g03238 ACH 52 213 Carbohydrate Esterase gene family AT3G14310 27.439 2.40e-18 80.5
Cich7g03241 . 52 213 Carbohydrate Esterase gene family AT3G14310 27.439 1.33e-17 78.6
Cich7g03543 . 56 239 Carbohydrate Esterase gene family AT1G53830 24.211 1.86e-10 57.8
Cich7g03547 . 46 224 Carbohydrate Esterase gene family AT5G53370 24.873 1.88e-09 54.7
Cich7g03549 . 55 217 Carbohydrate Esterase gene family AT3G14310 25.0 1.83e-10 57.8
Cich7g03550 ACH 56 220 Carbohydrate Esterase gene family AT1G53830 28.655 1.24e-10 58.2
Cich7g03587 . 31 306 Carbohydrate Esterase gene family AT1G68620 34.932 2.70e-48 163.0
Cich7g03588 . 36 306 Carbohydrate Esterase gene family AT1G68620 34.843 5.63e-49 165.0
Cich6g00103 . 495 702 Carbohydrate Esterase gene family AT5G36210 22.477 1.13e-06 50.4
Cich6g00104 . 40 597 Carbohydrate Esterase gene family AT3G49220 68.126 0.0 805.0
Cich6g00206 . 15 408 Carbohydrate Esterase gene family AT5G23870 62.944 0.0 532.0
Cich6g00262 . 245 309 Carbohydrate Esterase gene family AT4G19410 52.308 3.02e-20 83.6
Cich6g00318 . 4 511 Carbohydrate Esterase gene family AT2G45220 39.197 1.26e-118 357.0
Cich6g00320 . 11 511 Carbohydrate Esterase gene family AT2G45220 62.475 0.0 661.0
Cich6g00323 ACH 52 221 Carbohydrate Esterase gene family AT1G53830 31.214 6.02e-20 84.7
Cich6g00324 ACH 62 220 Carbohydrate Esterase gene family AT1G53830 28.931 5.68e-17 77.0
Cich6g00325 . 37 536 Carbohydrate Esterase gene family AT5G51490 54.167 0.0 561.0
Cich6g00381 . 1 359 Carbohydrate Esterase gene family AT5G61570 49.189 4.10e-108 319.0
Cich6g01760 . 383 460 Carbohydrate Esterase gene family AT3G27320 63.415 1.18e-24 104.0
Cich6g01761 . 1 446 Carbohydrate Esterase gene family AT5G14310 65.739 0.0 602.0
Cich6g02041 . 29 427 Carbohydrate Esterase gene family AT5G15860 61.654 2.45e-179 504.0
Cich6g02281 . 1 342 Carbohydrate Esterase gene family AT5G16080 53.736 6.98e-121 350.0
Cich5g00585 . 2 325 Carbohydrate Esterase gene family AT3G48700 45.427 3.13e-97 290.0
Cich5g01280 . 55 583 Carbohydrate Esterase gene family AT1G53830 47.736 4.11e-155 452.0
Cich5g01281 . 365 588 Carbohydrate Esterase gene family AT3G14310 68.75 2.85e-110 327.0
Cich5g01282 . 52 356 Carbohydrate Esterase gene family AT3G14310 46.732 1.55e-75 240.0
Cich5g01283 . 55 583 Carbohydrate Esterase gene family AT1G53830 47.547 1.60e-154 450.0
Cich5g01287 . 52 588 Carbohydrate Esterase gene family AT3G14310 56.506 0.0 583.0
Cich5g01288 . 358 583 Carbohydrate Esterase gene family AT1G53830 69.912 9.37e-109 325.0
Cich5g01289 . 61 357 Carbohydrate Esterase gene family AT1G53830 51.007 4.27e-86 268.0
Cich5g01290 . 56 587 Carbohydrate Esterase gene family AT3G14310 56.203 0.0 587.0
Cich5g01291 . 5 592 Carbohydrate Esterase gene family AT3G14310 59.694 0.0 674.0
Cich5g01387 . 91 388 Carbohydrate Esterase gene family AT1G05310 41.275 4.73e-81 250.0
Cich5g01721 . 91 393 Carbohydrate Esterase gene family AT1G05310 54.455 3.49e-123 360.0
Cich5g01726 . 73 389 Carbohydrate Esterase gene family AT1G05310 49.057 6.40e-110 325.0
Cich5g01727 . 91 389 Carbohydrate Esterase gene family AT1G05310 50.836 1.38e-107 320.0
Cich5g01880 ACH 69 729 Carbohydrate Esterase gene family AT5G36210 72.932 0.0 1035.0
Cich5g02585 . 4 329 Carbohydrate Esterase gene family AT3G48700 48.466 8.12e-99 296.0
Cich5g02592 . 4 329 Carbohydrate Esterase gene family AT3G48700 48.16 2.22e-102 303.0
Cich5g03391 . 4 329 Carbohydrate Esterase gene family AT3G48700 47.853 6.89e-102 302.0
Cich5g03394 . 4 329 Carbohydrate Esterase gene family AT3G48700 48.466 2.61e-98 293.0
Cich5g03396 . 4 329 Carbohydrate Esterase gene family AT3G48700 47.853 1.09e-97 291.0
Cich4g00019 . 93 606 Carbohydrate Esterase gene family AT4G33230 34.256 8.84e-99 312.0
Cich4g00073 . 49 532 Carbohydrate Esterase gene family AT4G02300 52.857 0.0 522.0
Cich4g00074 . 11 571 Carbohydrate Esterase gene family AT4G02330 58.259 0.0 665.0
Cich4g00090 . 62 216 Carbohydrate Esterase gene family AT3G14310 31.646 8.57e-16 72.8
Cich4g00184 ACH 1 343 Carbohydrate Esterase gene family AT3G63010 74.063 0.0 542.0
Cich4g00388 . 226 309 Carbohydrate Esterase gene family AT4G19410 53.571 2.81e-27 102.0
Cich4g02063 . 225 306 Carbohydrate Esterase gene family AT4G19410 51.22 1.67e-25 97.4
Cich4g02698 . 2 258 Carbohydrate Esterase gene family AT2G41530 77.907 1.79e-155 435.0
Cich4g03291 . 2 415 Carbohydrate Esterase gene family AT3G05910 65.947 0.0 589.0
Cich4g03403 . 17 640 Carbohydrate Esterase gene family AT3G05610 42.985 0.0 571.0
Cich4g03411 . 8 543 Carbohydrate Esterase gene family AT3G05620 64.88 0.0 713.0
Cich4g04031 . 1 280 Carbohydrate Esterase gene family AT3G48690 43.617 3.27e-66 207.0
Cich4g04036 . 193 314 Carbohydrate Esterase gene family AT3G48700 41.803 5.77e-22 88.2
Cich4g04037 . 5 139 Carbohydrate Esterase gene family AT1G49660 51.111 9.31e-42 139.0
Cich4g04040 . 1 324 Carbohydrate Esterase gene family AT3G48690 48.773 1.17e-90 271.0
Cich4g04042 . 1 321 Carbohydrate Esterase gene family AT3G48690 46.296 1.53e-84 255.0
Cich4g04044 . 4 330 Carbohydrate Esterase gene family AT3G48700 43.902 3.64e-86 261.0
Cich4g04045 . 12 325 Carbohydrate Esterase gene family AT3G48700 47.134 9.23e-91 273.0
Cich4g04051 . 4 315 Carbohydrate Esterase gene family AT3G48690 46.795 1.78e-91 274.0
Cich4g04052 . 4 324 Carbohydrate Esterase gene family AT3G48690 46.417 1.02e-91 275.0
Cich3g00308 ACH 68 229 Carbohydrate Esterase gene family AT5G53370 31.034 2.89e-19 83.2
Cich3g00432 . 9 333 Carbohydrate Esterase gene family AT1G68620 52.239 7.83e-118 342.0
Cich3g00842 . 24 341 Carbohydrate Esterase gene family AT5G16080 33.533 1.21e-55 184.0
Cich3g00843 . 24 341 Carbohydrate Esterase gene family AT5G16080 33.234 1.34e-56 185.0
Cich3g00844 . 28 341 Carbohydrate Esterase gene family AT5G16080 35.455 5.24e-60 194.0
Cich3g01377 . 27 135 Carbohydrate Esterase gene family AT3G16970 25.664 8.40e-08 46.2
Cich3g01607 . 170 247 Carbohydrate Esterase gene family AT5G15860 76.923 3.32e-40 139.0
Cich3g02888 . 5 592 Carbohydrate Esterase gene family AT3G14310 65.455 0.0 763.0
Cich3g02892 . 13 592 Carbohydrate Esterase gene family AT3G14310 63.356 0.0 721.0
Cich3g02893 . 17 592 Carbohydrate Esterase gene family AT3G14310 66.954 0.0 761.0
Cich3g02896 . 1 581 Carbohydrate Esterase gene family AT1G53840 55.822 0.0 653.0
Cich3g03154 . 349 395 Carbohydrate Esterase gene family AT1G26120 59.184 1.49e-12 65.9
Cich3g04442 . 431 527 Carbohydrate Esterase gene family AT4G02330 54.639 6.76e-33 119.0
Cich3g05411 . 428 523 Carbohydrate Esterase gene family AT1G11580 62.5 1.96e-40 140.0
Cich3g05440 . 1 446 Carbohydrate Esterase gene family AT5G14310 68.387 0.0 631.0
Cich2g00156 ACH 51 218 Carbohydrate Esterase gene family AT1G53830 34.32 6.37e-26 102.0
Cich2g00157 ACH 57 218 Carbohydrate Esterase gene family AT1G53830 34.356 6.98e-25 99.4
Cich2g00158 . 59 216 Carbohydrate Esterase gene family AT3G14310 22.785 4.62e-14 68.2
Cich2g00159 . 75 227 Carbohydrate Esterase gene family AT5G53370 34.356 2.16e-19 83.2
Cich2g00598 . 50 138 Carbohydrate Esterase gene family AT2G41530 84.27 3.29e-52 163.0
Cich2g00923 . 45 427 Carbohydrate Esterase gene family AT5G15860 63.753 1.27e-177 507.0
Cich2g00924 . 73 427 Carbohydrate Esterase gene family AT5G15860 62.953 7.69e-168 473.0
Cich2g01146 ACH 59 218 Carbohydrate Esterase gene family AT3G14310 26.829 6.59e-17 76.3
Cich2g01147 . 52 218 Carbohydrate Esterase gene family AT3G14310 24.405 1.09e-14 70.9
Cich2g02276 . 45 546 Carbohydrate Esterase gene family AT5G09760 61.508 0.0 647.0
Cich2g02488 . 42 205 Carbohydrate Esterase gene family AT1G25141 27.869 1.37e-10 59.3
Cich2g03520 . 254 307 Carbohydrate Esterase gene family AT3G49220 50.0 1.48e-13 63.9
Cich2g04534 . 48 170 Carbohydrate Esterase gene family AT2G41530 83.74 5.84e-75 223.0
Cich2g04699 . 2 282 Carbohydrate Esterase gene family AT2G41530 79.078 5.13e-176 488.0
Cich2g04780 . 1 612 Carbohydrate Esterase gene family AT2G26450 48.714 0.0 568.0
Cich2g04789 . 50 216 Carbohydrate Esterase gene family AT3G14310 28.571 9.95e-15 69.7
Cich2g04972 . 114 149 Carbohydrate Esterase gene family AT3G43270 47.222 2.27e-07 44.3
Cich2g05247 . 33 518 Carbohydrate Esterase gene family AT4G02320 52.857 0.0 529.0
Cich1g00051 ACH 1 341 Carbohydrate Esterase gene family AT3G63010 75.072 0.0 547.0
Cich1g00167 ACH 398 436 Carbohydrate Esterase gene family AT1G26120 56.41 4.64e-08 54.3
Cich1g00785 . 9 427 Carbohydrate Esterase gene family AT3G09410 63.484 0.0 559.0
Cich1g00917 . 251 306 Carbohydrate Esterase gene family AT4G19410 53.571 1.71e-18 76.3
Cich1g01662 . 12 272 Carbohydrate Esterase gene family AT3G48690 45.42 7.57e-78 237.0
Cich1g01663 . 11 314 Carbohydrate Esterase gene family AT1G19190 43.871 1.56e-86 261.0
Cich1g01665 . 1 89 Carbohydrate Esterase gene family AT3G48690 50.562 7.38e-26 98.6
Cich1g02039 . 201 294 Carbohydrate Esterase gene family AT3G63010 68.085 2.54e-40 139.0
Cich1g02204 . 1 582 Carbohydrate Esterase gene family AT1G53840 59.727 0.0 697.0
Cich1g02206 . 59 592 Carbohydrate Esterase gene family AT3G14310 62.687 0.0 673.0
Cich1g02207 . 46 592 Carbohydrate Esterase gene family AT3G14310 64.182 0.0 708.0
Cich1g02246 . 28 525 Carbohydrate Esterase gene family AT4G33220 61.277 0.0 648.0
Cich1g02247 . 31 547 Carbohydrate Esterase gene family AT2G26440 62.147 0.0 654.0
Cich1g02258 . 56 581 Carbohydrate Esterase gene family AT1G53830 40.672 2.32e-128 387.0
Cich1g02461 . 60 357 Carbohydrate Esterase gene family AT5G47500 48.829 3.35e-103 307.0
Cich1g03001 . 45 118 Carbohydrate Esterase gene family AT3G16970 29.333 2.94e-06 42.4
Cich1g03404 . 42 118 Carbohydrate Esterase gene family AT3G16970 30.952 1.01e-07 47.4
Cich1g03954 . 28 334 Carbohydrate Esterase gene family AT5G16080 30.0 1.64e-48 164.0
Cich1g04020 ACH 69 729 Carbohydrate Esterase gene family AT5G36210 68.168 0.0 961.0
Cich1g04461 . 107 176 Carbohydrate Esterase gene family AT1G19190 60.0 5.36e-25 99.4
Cich1g04629 . 82 178 Carbohydrate Esterase gene family AT5G36210 71.287 9.71e-40 139.0
Cich1g05188 . 20 700 Carbohydrate Esterase gene family AT4G15980 37.573 6.70e-140 425.0
Cich1g05251 . 27 362 Carbohydrate Esterase gene family AT5G47500 76.488 0.0 544.0
Cich1g05273 . 395 540 Carbohydrate Esterase gene family AT3G62170 50.336 2.77e-40 149.0
Cich1g05274 . 1 588 Carbohydrate Esterase gene family AT2G47030 38.699 3.62e-132 397.0