AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cich4g04055 ATGGAAATACAACTCATGATACCGTCGCCGGCGGTCGATTTCAACGTCGAAAGCACTAATACCACTCCCTACGTCACCGCACCTTCAACCCCGCACCGTTTCCCCAATTTCTTCTACACCGCACCCACAAGCCCCATCCACTCCCTCGCCATCGGCTTTCAAGCTGATGAACATGAACATGACGACGATAAGGATTTTGCTTTCGATTTCACCGGACAGCTTGAACCGCCTTCTATATCCGCCGCCGACGAGCTCTTTCATTGCGGTAAGATTAAACCATTAAAGCCTGTTTCCGGTACTCCGTCTAAATCCCCCACATCCCGCTTCTCACAAGCATTTTCTCCTCGGCGTATGAAGAAGGATTTTGATGCTTTCACTGAGGCATTAAAGCAAACATCTTCTGATCAAGCCCAAACCAGTCAAAATCCGTCGAAACGAGGAAGGGAATCGACGACCAACACCAAAACCAGAGACAAAGAATCACCGTCGTCATCGCCGTTTAGAATTTCTGATATTTTGTTGGAAGAAAATACCAATCAGAGAAACCCAACGAATCAATCGTCGTCGTTAACGTGGTACAATAAATGGAACCTTAAGAACCTGCTGTTGTTTCGAAGCGCGTCGGAGGGGAGTTCAAGGAGGAGCAAAGATCCGGTGAATAAATACTCAAGGATAAGGAAAAGCGGTGACGCCGGTGAGGATGTGAAGAATTCAAGCTTTAGAAGTACGGAGAGTTTGGGTTCGAGTAGGAGGGTGATGAGGAAGGTTTCAGCGCATGAAATACATTACACGGCGAACAGGGCGGTGGCGGAAGAGATGAGGAAGAAGACGTACTTGCCGTACAAATCAGGGTTATTGGGTTGCTTGGGGTTCCATAACAATGGCCGGGGCAGTATTCATGAAATTTCAAGAGGGATCACTTCTGTTATGAAGCAACGATGA 942 47.56 MEIQLMIPSPAVDFNVESTNTTPYVTAPSTPHRFPNFFYTAPTSPIHSLAIGFQADEHEHDDDKDFAFDFTGQLEPPSISAADELFHCGKIKPLKPVSGTPSKSPTSRFSQAFSPRRMKKDFDAFTEALKQTSSDQAQTSQNPSKRGRESTTNTKTRDKESPSSSPFRISDILLEENTNQRNPTNQSSSLTWYNKWNLKNLLLFRSASEGSSRRSKDPVNKYSRIRKSGDAGEDVKNSSFRSTESLGSSRRVMRKVSAHEIHYTANRAVAEEMRKKTYLPYKSGLLGCLGFHNNGRGSIHEISRGITSVMKQR 313
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cich4g04055 313 Pfam Protein of unknown function (DUF1645) 82 280 IPR012442 -
Cich4g04055 313 MobiDBLite consensus disorder prediction 130 149 - -
Cich4g04055 313 MobiDBLite consensus disorder prediction 150 164 - -
Cich4g04055 313 MobiDBLite consensus disorder prediction 207 247 - -
Cich4g04055 313 MobiDBLite consensus disorder prediction 165 189 - -
Cich4g04055 313 MobiDBLite consensus disorder prediction 99 113 - -
Cich4g04055 313 PANTHER OS07G0619500 PROTEIN 25 293 - -
Cich4g04055 313 MobiDBLite consensus disorder prediction 130 189 - -
Cich4g04055 313 MobiDBLite consensus disorder prediction 210 234 - -
Cich4g04055 313 MobiDBLite consensus disorder prediction 94 113 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cich4g04055 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
60581 Cich1g01669 Cich4g04055
62992 Cich4g04055 Cich7g00281
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cich Cich-Chr4:118930986 Cich5g00572 Cich-Chr5:11304355 dispersed
Cich Cich-Chr1:25851211 Cich4g04055 Cich-Chr4:118930986 transposed
Cich Cich-Chr1:33559293 Cich4g04055 Cich-Chr4:118930986 wgd
Cich Cich-Chr4:118930986 Cich5g00569 Cich-Chr5:11271397 wgd
Cich Cich-Chr4:118930986 Cich7g00281 Cich-Chr7:8345785 wgd