AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cich4g04063 ATGGCTCCTGCAAAGCCAAGCGCTCGGGCGATCTCGCAACAAGCATTCGATGAAATGGTTAAGGAAAACATAGACGATCTAGGTATGGAACCAACGGAAGCCCTAAGCGATGCCATCGAAACCCTTACTCTTCAAGGCGTAGATCTGTCTGGTATCGTCACCTCTACACTCCCTGGAGAAACCAATCCCGTGATCCAATCTCTTGACAGAATCAAACAATTACAGAGTTCGGATTGGACAGACGAAACAGTCTTAGAGGAGGCGCTAGATTTGTTCGATAATTTGACCGCTTTGTCCCGTATCGAAGGATCCGGAAATGCTGCGATTGCTACGAGAAACGGAGGTATAGAATTAATGTGCTCTGTTTGTTCGAAGCTTAGCGAATTTCGCCGTGATTCTGCACTTGCATCGGCTTTGAATGCATTGGCTGCATTTCCTCACGATATTCAAAGTACAGAAACCTTCCGGCAAAGTGGAGGACCAAAACTCGTGATTGGAACCCTAACTGACAAAACTCAAAGTACAAACATCTTAAACAGTGCCTTCTCTGTTGTTGCTGCTTCTGCAACTGGTAATGAGGTTCTCAAAGAATCATATGTGGAGTTACACATAGACGAATTAATACTTAAAATCATGAAGAACCATACAAAAGGAAACATCCCCAGTTTATATGACACCATTCGAGTCCTTCTAGCAGCTGATGATAACCGTGTAGTCGCTTCACAAGTTTACGGGTATGCTCGAAGATTTGCTAAAATTGGAATCACTGAAGCTCTTGTGGACTCACTCAATGAAGGACTTAACTCATCAAGTCTTGTATCAATAACAATTGCACTAAAAGCAATTGCAGTGAATGATGAAATATGCAGATCTGTTGCTGAAAAAGGTGGAATAGATTCTTTACTCATTTGCATCGATGAATCTGGTATACAAGGGAACAAAACTGTCGCCAAATCTTGCTGCTCTTTATTATCAAAGTTGGCAGGAAGTGACTTTAACAAAAGTGCTATAATAGAAAGAAAAGGTTTGAATAGACTCATTACACTTTCTAGTAGACTTGGTGATGATCCTTCTGTTATCCAAGAAGTGATGTCCATCATATGCACCCTGTGCCTGCGGTCACCGGATAATGCTGCCATGGCCATGGAAGCTGGAGCAGGGGAGCTTGCTATTCAATCCATGAAGAAGTTTCCGGAAGCTTCTCAGTTGCAGAAAAATTCTTGTCTCATGATTCGTAATCTTGTGGCTAGAAATACAGAAAACAGGTCGATTTTGTTGAGTAATGGTATTGAGAAGGTGATAAGGAATGCTAAAGAGAGTCATAAATGTTGTAAAGATGCGGGGACCGCTGCGCTTAGAGACTTGGGGCTTGAAAATTACAACTTGTAG 1389 42.19 MAPAKPSARAISQQAFDEMVKENIDDLGMEPTEALSDAIETLTLQGVDLSGIVTSTLPGETNPVIQSLDRIKQLQSSDWTDETVLEEALDLFDNLTALSRIEGSGNAAIATRNGGIELMCSVCSKLSEFRRDSALASALNALAAFPHDIQSTETFRQSGGPKLVIGTLTDKTQSTNILNSAFSVVAASATGNEVLKESYVELHIDELILKIMKNHTKGNIPSLYDTIRVLLAADDNRVVASQVYGYARRFAKIGITEALVDSLNEGLNSSSLVSITIALKAIAVNDEICRSVAEKGGIDSLLICIDESGIQGNKTVAKSCCSLLSKLAGSDFNKSAIIERKGLNRLITLSSRLGDDPSVIQEVMSIICTLCLRSPDNAAMAMEAGAGELAIQSMKKFPEASQLQKNSCLMIRNLVARNTENRSILLSNGIEKVIRNAKESHKCCKDAGTAALRDLGLENYNL 462
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cich4g04063 462 SUPERFAMILY ARM repeat 136 455 IPR016024 -
Cich4g04063 462 Gene3D - 33 240 IPR011989 -
Cich4g04063 462 Gene3D - 241 461 IPR011989 -
Cich4g04063 462 PANTHER UNCHARACTERIZED 6 456 - -
Cich4g04063 462 SMART arm-5 374 416 IPR000225 GO:0005515(InterPro)
Cich4g04063 462 SMART arm-5 330 372 IPR000225 GO:0005515(InterPro)
Cich4g04063 462 SMART arm-5 285 329 IPR000225 GO:0005515(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cich4g04063 K24166 armadillo repeat-containing protein 6
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cich Cich-Chr4:119182588 Cich8g00044 Cich-Chr8:1548039 dispersed