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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cich4g04072 ATGGGGAACTTAAATCCATCTTCTGAGCTAACCTTGGATTTCAGACAAAGTTTTATCCCCAAAACAATCGGTCAGTTTCTTGGAGAAGTGTCGAGAATCGGTAACGTAACTGAGAAGGTTTTGCAATTCGATGAATTGGTTAATCGATTAGAAACGGAAACGCAGAAAATCGAAGCATTTAAAGGAGAACTCCCTCTATGCATGCTCCTCATCAACGATGCAATCCATGCGTTGAAGGACGAATCAACGATGTTGAAGAAATCATCAAATCCCGAACCAGTACTTGAAGAGTTTATACCGATGAAGAACAGCTGTAATCATGATTCAGAAATCGAAATTGCAAAACAAAACGACAATGGCGATAAGAGGAATTGGTTGAGCTCGACACAGCTTTGGAATACAAATGAGAACGTCGATCAGAAAGCGAATTCAATAGAAGAAAGATTAATCCCGTTGCAGAAAGCTGAGGAAGAAGACGCCGGGAGATCATTTTTCAATCGTGAAACTAAGAATCAAAAGAGCGGAAATGGTTTGGTTACTGAAATCCATGGTGATAGTAGATTAAGTTCTTGCTCTAAACGGAAAATTAATGGCGGCACTGTGCGTCCACCACCACCACAGCAGCCGACGACCAGGAAACAAAGAAGATGTTGGTCAACGGAGTTGCATAGACGATTTCTTAGTGCCCTACAAGAACTTGGTGGTTCACAAGCAGCCACCCCTAAGCAGATTCTAGAGCTTATGCAAGTAGATGGTCTCACTAATGACGAAGTAAAAAGCCATTTGCAAAAATATAGACTTCATACACGGAGGCTTCCATCTTCAAACACAAATCAAATTATGGGAGGAGGTTTATGGATGCCTATCCAAGATCAATATGTTGGATCGTCTAAATGTAGCAATTCTCAATCGGGTTCTCCAAATGGGCCCTTACCGAATTGTGGCAACAACATGGATGATGAAGATATGAAATCCGAGAATTATCGTTGGAATGGTAATCTTTAA 1005 41.0 MGNLNPSSELTLDFRQSFIPKTIGQFLGEVSRIGNVTEKVLQFDELVNRLETETQKIEAFKGELPLCMLLINDAIHALKDESTMLKKSSNPEPVLEEFIPMKNSCNHDSEIEIAKQNDNGDKRNWLSSTQLWNTNENVDQKANSIEERLIPLQKAEEEDAGRSFFNRETKNQKSGNGLVTEIHGDSRLSSCSKRKINGGTVRPPPPQQPTTRKQRRCWSTELHRRFLSALQELGGSQAATPKQILELMQVDGLTNDEVKSHLQKYRLHTRRLPSSNTNQIMGGGLWMPIQDQYVGSSKCSNSQSGSPNGPLPNCGNNMDDEDMKSENYRWNGNL 334
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cich4g04072 334 FunFam Myb family transcription factor 212 270 - -
Cich4g04072 334 MobiDBLite consensus disorder prediction 296 334 - -
Cich4g04072 334 SUPERFAMILY Homeodomain-like 210 271 IPR009057 -
Cich4g04072 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 210 270 IPR017930 -
Cich4g04072 334 MobiDBLite consensus disorder prediction 296 313 - -
Cich4g04072 334 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 21 324 IPR044787 GO:0003700(InterPro)|GO:0006355(InterPro)
Cich4g04072 334 MobiDBLite consensus disorder prediction 167 196 - -
Cich4g04072 334 Coils Coil 43 63 - -
Cich4g04072 334 Gene3D - 212 270 - -
Cich4g04072 334 NCBIfam myb-like DNA-binding domain, SHAQKYF class 213 268 IPR006447 GO:0003677(InterPro)
Cich4g04072 334 Pfam Myb-like DNA-binding domain 215 266 IPR001005 -
Cich4g04072 334 MobiDBLite consensus disorder prediction 160 216 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cich4g04072 K28176 GARP family transcription factor, NIGT1 subfamily
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Event-related genes

Select Gene_1 Gene_2 Event_name
60583 Cich1g01676 Cich4g04072
62994 Cich4g04072 Cich7g00283
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cich Cich-Chr3:9892863 Cich4g04072 Cich-Chr4:119319721 dispersed
Cich Cich-Chr4:119319721 Cich7g01749 Cich-Chr7:78424942 dispersed
Cich Cich-Chr1:33687296 Cich4g04072 Cich-Chr4:119319721 wgd
Cich Cich-Chr3:140937059 Cich4g04072 Cich-Chr4:119319721 wgd
Cich Cich-Chr4:119319721 Cich7g00283 Cich-Chr7:8441139 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cich9g00482 . 2 259 G2-like Transcription Factor family AT5G42630 40.0 1.16e-48 162.0
Cich9g01551 . 180 387 G2-like Transcription Factor family AT1G32240 56.944 1.35e-59 195.0
Cich8g01010 . 1 403 G2-like Transcription Factor family AT5G16560 41.064 1.02e-71 230.0
Cich7g00283 ACH 12 320 G2-like Transcription Factor family AT4G37180 40.0 4.28e-57 187.0
Cich7g01749 . 1 432 G2-like Transcription Factor family AT2G03500 47.992 1.17e-126 373.0
Cich7g03310 . 230 267 G2-like Transcription Factor family AT1G25550 57.895 4.55e-07 44.3
Cich7g03386 . 66 152 G2-like Transcription Factor family AT2G40260 51.724 3.43e-22 91.3
Cich7g03466 ACH 1 270 G2-like Transcription Factor family AT2G01060 62.868 1.99e-101 296.0
Cich6g00531 ACH 72 200 G2-like Transcription Factor family AT2G40260 62.791 7.86e-45 157.0
Cich6g02769 ACH 18 401 G2-like Transcription Factor family AT5G18240 44.417 4.50e-91 277.0
Cich6g02771 ACH 153 332 G2-like Transcription Factor family AT5G18240 46.703 1.43e-32 119.0
Cich5g02056 ACH 3 401 G2-like Transcription Factor family AT5G18240 49.373 1.00e-107 320.0
Cich5g02057 . 1 65 G2-like Transcription Factor family AT3G04030 69.231 2.54e-21 89.7
Cich5g02058 ACH 1 401 G2-like Transcription Factor family AT5G18240 49.765 6.62e-121 354.0
Cich5g02354 ACH 1 212 G2-like Transcription Factor family AT3G24120 77.83 5.79e-120 342.0
Cich4g00430 ACH 56 376 G2-like Transcription Factor family AT4G28610 53.731 1.89e-102 309.0
Cich4g00963 . 1 278 G2-like Transcription Factor family AT3G46640 54.636 7.26e-85 257.0
Cich4g01314 . 7 178 G2-like Transcription Factor family AT2G01060 49.133 3.29e-53 172.0
Cich4g01644 . 120 391 G2-like Transcription Factor family AT3G04450 50.365 1.18e-79 250.0
Cich4g01939 . 139 221 G2-like Transcription Factor family AT5G59570 48.193 1.98e-21 92.0
Cich4g02127 ACH 49 348 G2-like Transcription Factor family AT2G40260 39.735 9.24e-47 163.0
Cich4g03297 . 34 81 G2-like Transcription Factor family AT3G04030 60.417 6.04e-12 60.8
Cich4g04072 ACH 12 310 G2-like Transcription Factor family AT4G37180 39.498 8.29e-50 168.0
Cich3g00183 . 24 223 G2-like Transcription Factor family AT1G69580 59.113 1.36e-74 230.0
Cich3g00450 ACH 2 326 G2-like Transcription Factor family AT1G25550 52.793 4.98e-105 312.0
Cich3g00538 ACH 42 164 G2-like Transcription Factor family AT2G42660 48.8 3.49e-31 114.0
Cich3g01449 . 42 143 G2-like Transcription Factor family AT2G42660 55.769 2.04e-30 115.0
Cich3g01955 ACH 3 214 G2-like Transcription Factor family AT2G01060 77.523 7.58e-111 319.0
Cich3g01989 . 9 417 G2-like Transcription Factor family AT2G20570 49.655 3.44e-104 313.0
Cich3g03880 . 12 263 G2-like Transcription Factor family AT5G42630 42.059 3.77e-54 177.0
Cich3g04937 . 208 264 G2-like Transcription Factor family AT1G25550 61.404 8.53e-18 80.1
Cich2g00755 ACH 1 76 G2-like Transcription Factor family AT1G14600 75.0 4.35e-33 119.0
Cich2g00972 ACH 10 317 G2-like Transcription Factor family AT1G25550 47.181 2.03e-87 266.0
Cich2g03415 . 68 164 G2-like Transcription Factor family AT2G40260 64.0 1.37e-34 127.0
Cich2g03657 . 47 172 G2-like Transcription Factor family AT2G40260 62.698 1.97e-39 142.0
Cich2g04677 . 1 335 G2-like Transcription Factor family AT3G10760 54.36 1.62e-81 247.0
Cich1g00174 ACH 47 380 G2-like Transcription Factor family AT4G28610 53.143 7.05e-104 310.0
Cich1g00512 . 168 324 G2-like Transcription Factor family AT5G06800 64.242 2.65e-64 208.0
Cich1g00765 . 1 335 G2-like Transcription Factor family AT3G10760 59.882 1.25e-99 293.0
Cich1g00952 . 6 194 G2-like Transcription Factor family AT2G01060 47.15 8.51e-53 171.0
Cich1g01676 ACH 6 315 G2-like Transcription Factor family AT2G03500 40.87 5.01e-63 206.0
Cich1g03452 ACH 1 276 G2-like Transcription Factor family AT3G24120 67.986 5.31e-132 374.0
Cich1g04622 . 1 386 G2-like Transcription Factor family AT1G32240 44.836 5.17e-73 229.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Cich Myb_DNA-binding 1.9e-07 CL0123 TF GARP-G2-like