Gene detail

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Species

Gene ID

Example:

Or, Query Sequence

Example:

Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cich4g04078	ATGGTTGCCGTGAAAATGATGTTTCCGACGATAATGATGGCCACGGTGATCGCCGTTCGTTCATTAGATACAAACCAGGTTTTCGATCCATGTTCAGATTCAAAAGTTCGGAGATGGGATGGATTTACCTTCGGACTCGCATTTTCTTCCAAGGATTCCTTCTTCTCCAAACAAATTCAGCTTTCACCCTGCGACAGCCGCCTCTCCCTCTGTGGAAACGCGAAACTCGCCGTCTTCCGCCCAAAAGTCGACGAACTCACTGTCCTCACGATCAAGACCACCGACTTTGATCCGACGAAAGATGGTGGATATATGGTCGCATTTGCCGGAAAACAATACGCAGCAAGATCGATACCTGCTTTAGTCGCTGATAAATCAAACATCATCACAAGTTTCACTCTGGTACTTGAATTCCAAGAAGGCAGACTTATAAACTTATACTGGAAGAAATTTGGGTGTAAATCGTGTGCAGAGAAATCAAGTGTTTGCCTGAACAATCAAGAATGTGCTACACCAATTTCGAAGTGTAAGACCAATGTCGACTGCAATCTTAAAGTGCAATTAGCGTTTTCGGGTACAGATAAGGCGTTAGGTGTTCTTAACTCATGGTACGAGGTGAAAAAGCTTCGAGAATATTCGTTGGGTGGTATGAAATTGTTCAGAATATTAACATATATTAATGCCAGAAAACGGAGGGGTCATGGTCCATTTTGGCCCTCAAAACGTTCCGCTGCTGATTGCACAAACTCGTTCTCGTTCTTTCGCCCCGCTCTCCCTCTTCCATGGCGGATCAAACCAAACGGCTACAGCAACGTCGCCACAAGAAATCCCACAAACTCTCGTTTTCATGATCCCAAAATTTTGGATTACGAGTTCGATCATGCCCTCAATCGAATCATTTTCGCGTCAGGCTCATTACAATTCACATTCATCACAATCTACTGTCTCCCCGCATTTGATCTGATCGAGGAAGCAAAGCTTCGTACTGTATGGTGGGCTATATGTATTTTCGCTGTCACATACTTTTTAACCCATACCAGTAAATCGATGTGGATGAATGTTCCTATAGCAATTCTTCTGGTATCCGGCGCTCACATTCTATTAACCGAAGTGGATTTCCATTGGAAGACCAGGAAATCAGGCCGACGTTCATATCTATCACACTTAGAGAAAAAACAATTATCTGTGAATGATTCTCGTCTTAACACCTTGCCTCCTCCACCTAAATGGAAACGGAAGATAGATTCTCCAGTAGTCGAGGCTGCCATGGATGATTTCACTAACAAGATTTTGCAAGAATTTGTGCTTGATTTGTGGTATTCAGACATAACACCTGACAAAGAAGCTCCAGAGCTCATACATGCCATTATCATGGATATTCTTGCTGAAATCTCCATGAGAGTCAAAGACATAAACCTTGTTGACATGCTAACAAGGGATGTTGTTGACCTAGTAGGAGATCACTTAGAACTATTCAGGAAAAACCAAGCTTCTATTGGGAGAGAAGTTATGGTGACATTATCTTCTGAAGAAAGAGATGAAAGATTAAAACATCATCTCATGGCTTCAAACGAACTTCATCCAGCTTTAATATCTCCCGAGAGTGAGTACAAGTTTCTTAAACGGATTATGGGAGCACTTTTGGCTGCAGTACTTAGACCACGTGAAGCTCAATGCCCTTTAGTTAGATGCGTTACAAGAGAGCTTTTAACATGCTTGATAATGGAACCTGTAATGAGATTTGCAAGCCCAGGGCGTATAAATGAGTTGATTGAAGGTATTTTTCTTGCAACAAATAAGGGTGAAAAAGAGGGAAGTGATGATCAATCTAATGTCACAGATCAAATTCAACCCCAAAATCAATCTTCTAGTACAACTACAAACAATGAAAAAGGTCAAGAGTTAACTTCTTTTAACACCGGATCTTCTTGTAGTCAAAATAGTGAAAAGACATCAACTACCCCTAACACCCAAAAGGAAACAACTTCCACCGTGGCAAGTGGGCCCACCCAAGATGAATCAATGCATACACGGACATCCGATTGGGCCCGTGTTCTAGAAGCAGCAACCCAAAGAAGAACAGAAGTTCTTCAACCAGAAAATCTTGAAAACATGTGGACAAAAGGAAGAAATTACATGAAAAAATCCCAAAAGAATTCTATTATAAAAAGTGGTATGAATGAAAATTCTAGTTTTGATAGTGGGAGTGATCAGAATCTTGATGGTGGACAAAACAAGACACCAACACGTGTTAATTTTGATGAAAGTTTGAATTTTGATAGTGGAAGTGATGGGAAGTTGAAAAGGCTAAACAGTGCATCTGAGTCAAACATTCTAAGTTTGACCGAAAGTATTGCATCACCGATTCAAGTTGGTGGGACCATTATACCAGAGTTTTATAGTGCAAATGCTGGAAGAGATAGTGATGTTACAAATGTTAATGTTGGTTATGATAATAAAGTAATAAGGACTGAAGGGTATGTTCCAAAGCTTAGGTGTCGGGTTCTTGGAGCATTCTTTGAGAATATTGATTCAAAATCCTTTGCAGTCTATTCAATTGCAGTAACAGATGCTGATAACAAAACTTGGTTTGTAAAAAGAAGATACAGGAATTTTGAAAGATTACACCGCCATCTTAAAGACATTCCCAATTACACATTACATTTGCCTCCAAAAAGAATATTCTCATCAAGTACAGAAGATGCATTTGTTCACCAAAGATGTATACAGCTTGATAAATATCTCAAAGATCTTTTGTCTATAGCTAATATCGCCGAGCAACATGAAGTTTGGGACTTTTTGAGCATGTCTTCAAAGAGATACTGTTTTGGAAGATCATCATCAGTAGTCAAAGCCTTAGCAGTCAACGTGGATGATGCTGTAGACGACATTGTACGCCAATTTAAAGGCGGATTAAAGAGAAAAATTGTGGGCCCCGGTTCCCCTTCTGAATCACCTTCTTTATCTGCAAACAGAAATGTGACATGGGACATAAATGAAGGAACCGATTCACCATTAAGGCAACCGACTTTTGATATGACAAATTTTGTTTCTGATTATGAAGAATGTGAAAAAGATAAGACAGTTAATAATGAGGAAATGGAGTCAATGGGACAAGTTTACGGGGGTAATTTCGACAATGAGGTGAATTTAAGAGGAATTTCTCCAAAAATTGTTAAGAGTGAGGAACAAAATAATAAAAATTTAGTTTCGGAAAAGAAAAATAATTCAGAGGTGCGGTCTGAAGTACTTAACTTGGCTGCAAATTTTCCTTCAACTCCTGAAGATCCACTTGGTGTCCCAGCAGAGTGGACCCCACCTAATGTAAGTGTTCCTTTGCTAAATTTGGTAGACAAGATTTTTCAACTCAACAGAAGAGGCTGGTTAAGACGACAAGTTTTTTGGATATCAAAGCAAATTTTACAACTAATGATGGAAGACGCTATTGATGATTGGTTATTAAGGCAAATTCATTGGCTTAGGAGAGATGAAGTTGTTGCTCAAGGCATCCGATGGATCCAAGATATTTTATGGCCCGAAGGCATATTTTTTACGAAAGTCAAGACAAGTCAAACGGAATCTTCTCAATCAAATGAAGGACCTGCCCCGGCTCCATCGGGCAGCAAGGCTAATAATAAACAAGGGTCCTTTGAAGAGCAACTCGAGGCTGCCCGTAGAGCTAGTGATATCAAAAAGATGATATTCAAGGGAGCACCTACTACATTAGTGAGCTTGATTGGACGTAAGCAATACAAGCGATGTGCTAAAGATGTGTACTATTTTCTCCAGTCGGCTGTTTGTTTAAAGCAACTTGGATACGGTTTACTAGAACTTGCACTTATAACGGTTTTCCCGGAGCTTCAGGAGATTATTTCAAATGTTCATGAGAAGAAAAAAGAACACCATTTTGCAAGTTACCAGGTCAGTCCACGATTACCACCGATTGAGTTGGGATTATATGATGGTGATATTGTGCTTGGGTGA	3984	39.93	MVAVKMMFPTIMMATVIAVRSLDTNQVFDPCSDSKVRRWDGFTFGLAFSSKDSFFSKQIQLSPCDSRLSLCGNAKLAVFRPKVDELTVLTIKTTDFDPTKDGGYMVAFAGKQYAARSIPALVADKSNIITSFTLVLEFQEGRLINLYWKKFGCKSCAEKSSVCLNNQECATPISKCKTNVDCNLKVQLAFSGTDKALGVLNSWYEVKKLREYSLGGMKLFRILTYINARKRRGHGPFWPSKRSAADCTNSFSFFRPALPLPWRIKPNGYSNVATRNPTNSRFHDPKILDYEFDHALNRIIFASGSLQFTFITIYCLPAFDLIEEAKLRTVWWAICIFAVTYFLTHTSKSMWMNVPIAILLVSGAHILLTEVDFHWKTRKSGRRSYLSHLEKKQLSVNDSRLNTLPPPPKWKRKIDSPVVEAAMDDFTNKILQEFVLDLWYSDITPDKEAPELIHAIIMDILAEISMRVKDINLVDMLTRDVVDLVGDHLELFRKNQASIGREVMVTLSSEERDERLKHHLMASNELHPALISPESEYKFLKRIMGALLAAVLRPREAQCPLVRCVTRELLTCLIMEPVMRFASPGRINELIEGIFLATNKGEKEGSDDQSNVTDQIQPQNQSSSTTTNNEKGQELTSFNTGSSCSQNSEKTSTTPNTQKETTSTVASGPTQDESMHTRTSDWARVLEAATQRRTEVLQPENLENMWTKGRNYMKKSQKNSIIKSGMNENSSFDSGSDQNLDGGQNKTPTRVNFDESLNFDSGSDGKLKRLNSASESNILSLTESIASPIQVGGTIIPEFYSANAGRDSDVTNVNVGYDNKVIRTEGYVPKLRCRVLGAFFENIDSKSFAVYSIAVTDADNKTWFVKRRYRNFERLHRHLKDIPNYTLHLPPKRIFSSSTEDAFVHQRCIQLDKYLKDLLSIANIAEQHEVWDFLSMSSKRYCFGRSSSVVKALAVNVDDAVDDIVRQFKGGLKRKIVGPGSPSESPSLSANRNVTWDINEGTDSPLRQPTFDMTNFVSDYEECEKDKTVNNEEMESMGQVYGGNFDNEVNLRGISPKIVKSEEQNNKNLVSEKKNNSEVRSEVLNLAANFPSTPEDPLGVPAEWTPPNVSVPLLNLVDKIFQLNRRGWLRRQVFWISKQILQLMMEDAIDDWLLRQIHWLRRDEVVAQGIRWIQDILWPEGIFFTKVKTSQTESSQSNEGPAPAPSGSKANNKQGSFEEQLEAARRASDIKKMIFKGAPTTLVSLIGRKQYKRCAKDVYYFLQSAVCLKQLGYGLLELALITVFPELQEIISNVHEKKKEHHFASYQVSPRLPPIELGLYDGDIVLG	1327

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cich4g04078	1327	Gene3D	-	836	942	IPR036871	GO:0035091(InterPro)
	Cich4g04078	1327	MobiDBLite	consensus disorder prediction	601	678	-	-
	Cich4g04078	1327	SMART	PX-2	827	937	IPR001683	GO:0035091(InterPro)
	Cich4g04078	1327	MobiDBLite	consensus disorder prediction	724	758	-	-
	Cich4g04078	1327	Pfam	Sorting nexin C terminal	1128	1264	IPR013937	-
	Cich4g04078	1327	Pfam	PX domain	859	935	IPR001683	GO:0035091(InterPro)
	Cich4g04078	1327	SUPERFAMILY	PX domain	831	938	IPR036871	GO:0035091(InterPro)
	Cich4g04078	1327	CDD	PX-SNX19-like-plant	831	935	-	-
	Cich4g04078	1327	ProSiteProfiles	PX domain profile.	829	941	IPR001683	GO:0035091(InterPro)
	Cich4g04078	1327	ProSiteProfiles	PXA domain profile.	416	599	IPR003114	-
	Cich4g04078	1327	MobiDBLite	consensus disorder prediction	610	676	-	-
	Cich4g04078	1327	Pfam	PXA domain	416	592	IPR003114	-
	Cich4g04078	1327	SMART	PXA-3	416	599	IPR003114	-
	Cich4g04078	1327	PANTHER	PX SERINE-THREONINE KINASE PXK	320	1299	IPR051837	-
	Cich4g04078	1327	MobiDBLite	consensus disorder prediction	1191	1218	-	-

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cich4g04078	K17925	sorting nexin-13

Duplication type information

Select	Gene1	Location1	Gene2	Location2	Duplicated-type
	Cich	Cich-Chr1:132679819	Cich4g04078	Cich-Chr4:119423639	dispersed
	Cich	Cich-Chr4:119423639	Cich5g01983	Cich-Chr5:32482218	dispersed
	Cich	Cich-Chr4:119423639	Cich4g04079	Cich-Chr4:119438937	tandem
	Cich	Cich-Chr1:154436378	Cich4g04078	Cich-Chr4:119423639	transposed
	Cich	Cich-Chr3:61297938	Cich4g04078	Cich-Chr4:119423639	transposed
	Cich	Cich-Chr6:26611854	Cich4g04078	Cich-Chr4:119423639	transposed
	Cich	Cich-Chr1:33834924	Cich4g04078	Cich-Chr4:119423639	wgd