AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cich4g04095 ATGGATGACGTACCAGGATCCATGGGGACAAGTGCTGGTTTTGCCTTGAGACTTGGACAAACCATTTTTTCATCTGCTTCTCTTCTCTTCATGGCGTATGGTGTTCAGTTTTACAGCTATTCATCTTTCTGTTTCTTGGTGACAATCATGGGTTTGGTTATTCCATGGAGTTTCACATTGGCACTGCTTGATGGATACTCGGTTCTTGTAACATGCCCAGTTCGGCAAAAGGGTATACTGGTGATTATCGTTATTGGAGATTGGATGTTGTCGACTTTAACACTAGGTGCGGCTTCTTCAGGTGCTAGTGTGGTGGATATCTTGATGAGGGCGGATGGGTCTTTTTGCCCTTCGAATATATGTAGCCGATATCTTCTGTCGACCGTATTTGCTTTCTTGTCGTGGTTCTTATCCATGGGTTCTTCCTTGTTCAATCTATGGCTTCTTCCATCTTTGTGA 459 43.79 MDDVPGSMGTSAGFALRLGQTIFSSASLLFMAYGVQFYSYSSFCFLVTIMGLVIPWSFTLALLDGYSVLVTCPVRQKGILVIIVIGDWMLSTLTLGAASSGASVVDILMRADGSFCPSNICSRYLLSTVFAFLSWFLSMGSSLFNLWLLPSL 152
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cich4g04095 152 PANTHER CASP-LIKE PROTEIN 5B3 1 151 IPR045009 GO:0016020(PANTHER)
Cich4g04095 152 Pfam Casparian strip membrane protein domain 8 137 IPR006702 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cich4g04095 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cich Cich-Chr4:120242846 Cich8g01410 Cich-Chr8:42121143 dispersed
Cich Cich-Chr2:105170704 Cich4g04095 Cich-Chr4:120242846 transposed
Cich Cich-Chr3:142030789 Cich4g04095 Cich-Chr4:120242846 wgd