AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cich4g04102 ATGGATGAAACGGAGAACCCGGCGGAAGCCAAGAGAACCACCGTCGGGCCGCCATCCGTGCTGGAGTACCTGGACCCCAACTACTGGAACGACAGGTTCACTTCCGAGGATCATTACGAATGGCTTAAAGATTACTCCCATTTTCGTCATCTCATTCAGCAACATATCAAACCTTCATCTTCTGTATTGGAGCTAGGATGTGGAAACTCACAACTGTCTGACGAGTTATATAAAGAAGGAATCACCAAGCTAACCTGCATCGACTTATCTTCAGTTGCAGTCGAGAAGAAGAAGAAACAGTTGTTATCAAAAGGCTACAAAGATATTAAAGTGTTGGAAGGCGACATGTTGAATCTTTCATTTCCTGATGAGTCGTTCGATGTTGTTATAGAGAAAGGAACAATGGATGTTTTGTTCGTGGACAGTGGCGACCCATGGAACCCAAAGCCCGAGACTGTAAACAAAGCAATGTCAATGCTTCAAGGTGTTCATAGAGTTTTGAAACCGGATGGGATTTTTATTTCAATCGCTTTTGGTCAGCCACATTTCAGACGGCCGTTATTCAATGCTCCTGAGTTTACATGGTCAATTGAGTACACTACATTTGGGGATGGATTTCACTATTTCTTTTATATCTTGAGGAAGGGATGTAGATTGTTGGAGATGAATGAAGTGAAGAAGGTTGATGCACCTTGTCTTGACCTTTTTCAAGATGAATTGGATAATGAAGATTACTTGTTTCGGACCAATATTGATGACGTGGATGATGATAGTTGA 777 42.08 MDETENPAEAKRTTVGPPSVLEYLDPNYWNDRFTSEDHYEWLKDYSHFRHLIQQHIKPSSSVLELGCGNSQLSDELYKEGITKLTCIDLSSVAVEKKKKQLLSKGYKDIKVLEGDMLNLSFPDESFDVVIEKGTMDVLFVDSGDPWNPKPETVNKAMSMLQGVHRVLKPDGIFISIAFGQPHFRRPLFNAPEFTWSIEYTTFGDGFHYFFYILRKGCRLLEMNEVKKVDAPCLDLFQDELDNEDYLFRTNIDDVDDDS 258
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cich4g04102 258 Gene3D Vaccinia Virus protein VP39 21 229 IPR029063 -
Cich4g04102 258 Pfam Methyltransferase domain 57 177 IPR025714 -
Cich4g04102 258 FunFam EEF1A lysine methyltransferase 4 21 231 - -
Cich4g04102 258 CDD AdoMet-MTases 62 178 - -
Cich4g04102 258 PANTHER SAM-DEPENDENT METHYLTRANSFERASE SUPERFAMILY PROTEIN 15 216 IPR051419 -
Cich4g04102 258 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 20 248 IPR029063 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cich4g04102 K22857 EEF1A lysine methyltransferase 4 [EC:2.1.1.-]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cich Cich-Chr4:120446208 Cich5g03308 Cich-Chr5:74916803 transposed
Cich Cich-Chr4:120446208 Cich5g02667 Cich-Chr5:55381461 transposed