AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cich4g04113 ATGGCTTCATCTTCCAGTTACAGCCGTCTCTTCCATGCTCTACTGCTCATACATCTACAGATCTGCAGTTCCCGGAAAATCATTGAAACCCCGATGAAAAACGATCATAACGAAGAAAATCATATAACAATTTACGGAAAGAAGGAAGTTGATGATTTGGATCCGGCTTTAAAAGTGTTCTTCAATGTAAACGATTTATATATGGGGAAAAAAATGCAGATTTATTTCGCGACAAACGATCCATCAACAACTCCTCGGTTACTCGCTAGAGAACAAGCCGATTCAATACCATTCTCATCGTCAAAACTGCCGGAGCTTCTTGACTTTTTATCGTTGACCGGCGACTCACCACAAGCCAAAGCCATGGAGCAAACACTTAAACAATGTGAGCTTGAGCCGACACCCGGTGAGACCAGGTTCTGTGCTTCCTCGTTGGAATCGATGCTGGACTTGACACGTGGCATATTGGGTATCGACAAACTCAAGACGTTGACCACAAAGATCCATAATTTGACGGATTCCGGCTATACCCTTTTACAGGAGTACACGTTTTTAGAGAAGCCATTGGAGATTCATGTTCCTGATATGGTGGCTTGTCATACCATGGCGTATCCTTATGCGGTTTACTATTGCCATGGTCAAAAGGGGTATAACAGGGCTTTTGAGATTTCTTTAGGGGGTGAAAATGGAAATAGAATCGATGCTATTGCTGTTTGCCACATGAACACCTCCATGTGGGACCGTGACCACGTGGCGTTTCGGATTCTCGGAGGCCAGCCTGGCAGCTCGCCTGTGTGTCATTTTCTCCCGGCCGATAACATCATGTGGATCCCGTCGGTGTAG 843 45.31 MASSSSYSRLFHALLLIHLQICSSRKIIETPMKNDHNEENHITIYGKKEVDDLDPALKVFFNVNDLYMGKKMQIYFATNDPSTTPRLLAREQADSIPFSSSKLPELLDFLSLTGDSPQAKAMEQTLKQCELEPTPGETRFCASSLESMLDLTRGILGIDKLKTLTTKIHNLTDSGYTLLQEYTFLEKPLEIHVPDMVACHTMAYPYAVYYCHGQKGYNRAFEISLGGENGNRIDAIAVCHMNTSMWDRDHVAFRILGGQPGSSPVCHFLPADNIMWIPSV 280
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cich4g04113 280 SMART BURP-2 58 279 IPR004873 -
Cich4g04113 280 PANTHER BURP DOMAIN PROTEIN USPL1-LIKE 41 279 IPR044816 -
Cich4g04113 280 Pfam BURP domain 59 277 IPR004873 -
Cich4g04113 280 ProSiteProfiles BURP domain profile. 60 279 IPR004873 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cich4g04113 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
62996 Cich4g04113 Cich7g00301
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cich Cich-Chr4:120664791 Cich5g01611 Cich-Chr5:26851955 dispersed
Cich Cich-Chr4:120664791 Cich4g04118 Cich-Chr4:120818505 proximal
Cich Cich-Chr4:54118060 Cich4g04113 Cich-Chr4:120664791 transposed
Cich Cich-Chr4:55744813 Cich4g04113 Cich-Chr4:120664791 transposed
Cich Cich-Chr4:120664791 Cich7g00301 Cich-Chr7:8820707 wgd