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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cich4g04137 ATGATACGAGCGGTGATAATAATGAACGACCAAGGCAAGCCTCGCCTCGTCAAATTCTACGACCATCAGCCGATGGAGAAACAACAAGAAATCATCCGTAGCATCTATGGAGTTCTATGCAGTAGAGCAGAGAATGTGAGCAACTTTGTTCACGCAGATTCTACTTTTGGACAGGATACTAGACTTGTATACAAGACTTTTGCTACATTGTACTTCATTGTAATATTTGATGATTCTGAAAATGAGCTTGCCATTCTAGATCTTATGCAAGTATTCGTGGAGACGTTAGACAAATGTTTCAGTAACGTCTGTGAGCTCGATATAATCTTCAATTTCAACAAGGTACATACTATACTTGATGAAATTATTTTAGGTGGCCAAGTTGTTGAAATGAACTCTTCTGACGTGGTCAAAGCAGTCAATGACATATCTGGGCTTGAGAAGAACCCTAATTCAATCCTTCGAGTATCAAAATCCATATCTGGTTGGCAAGGACGATAA 501 39.12 MIRAVIIMNDQGKPRLVKFYDHQPMEKQQEIIRSIYGVLCSRAENVSNFVHADSTFGQDTRLVYKTFATLYFIVIFDDSENELAILDLMQVFVETLDKCFSNVCELDIIFNFNKVHTILDEIILGGQVVEMNSSDVVKAVNDISGLEKNPNSILRVSKSISGWQGR 166
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cich4g04137 166 Gene3D - 1 160 - -
Cich4g04137 166 Pfam Clathrin adaptor complex small chain 1 142 IPR022775 -
Cich4g04137 166 PANTHER ADAPTOR COMPLEXES SMALL SUBUNIT FAMILY 2 143 IPR016635 GO:0015031(InterPro)|GO:0016192(PANTHER)|GO:0043231(PANTHER)
Cich4g04137 166 ProSitePatterns Clathrin adaptor complexes small chain signature. 62 72 IPR000804 GO:0006886(InterPro)|GO:0016192(InterPro)|GO:0030117(InterPro)
Cich4g04137 166 FunFam AP complex subunit sigma 1 156 - -
Cich4g04137 166 SUPERFAMILY SNARE-like 1 141 IPR011012 -
Cich4g04137 166 PIRSF AP-complex-sigma 1 156 IPR016635 GO:0015031(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cich4g04137 K12399 AP-3 complex subunit sigma