AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cich4g04172 ATGGGAATCAATGCTGATGCTTTATGCGAGTTCTGGCACACCTTTGACTTTGATCAAGATAACTCATTGATACAATCTTTGGGGGAACTCAACATGTATCTATCGATCTACTTAACTTGTAAAAACCCTTGCTCCTATTTGGACAGGAAACACTGCACTACTCACCCCTCATCAATGGCGGCGGCTTCTTCTTCTCACCTTCAATTTCAATCTCTTTCTTTCGCAAAAACCCTAAATCAATCTTCAAAGCGGATCACTCCCAAAACCCTAATTTCTTACAAACCCGGTTCCAAAACACTCGCTATCCGAGCCGTCATATCGCAAAATCCTGTAGAAACTCAGACATTTCAGCATTGCTTCACCAAAAAAGATGACGGCTATCTGTACTGTGAGGGTCTTAAAGTTCAAGAAGTCATGGAGGCCGTTGAAAAAAGGCCGTTTTATCTTTACAGCAAGCCTCAGATAACCAGAAACGTTGAGGCTTATAAGGATGCTTTGAAGGGTTTGAATTCGATCATCGGTTATGCTATTAAAGCCAATAACAACTTCCTGATATTACAACATTTGAAGAATTTGGGTTGTGGGGCTGTTTTAGTTAGCGGAAATGAGCTCAGATTGGCCATTCGCGCCGGCTTTGATCCTACCAAGTGTATTTTCAATGGAAACGGGAAGCTTTTGGAGGATCTTGTTCTTGCTGCCCAAGAAGGCGTATTTGTTAACATTGACAGTGAATTTGATTTGGATAATATTGTATCGGCTGCAAGAATTGCTGGCAAGAAAGTTAATGTATTGCTTCGAATCAATCCAGATGTTGATCCTCAGGTCCATCCTTATGTTGCAACTGGGAACAAAAACTCCAAATTCGGTATAAGAAACGAGAAATTACAATGGTTTTTAGACGCCGTGAAATCATACCCCGATGAACTTAAGCTAGTTGGGGCCCACTGCCATCTCGGATCCACCATTACCAAGGTCGACATTTTCCGAGACGCCGCATCCATTATGGTGAAGTTTATAGACGAAATTCGCGCACAAGGATTCGATATTAATTATTTAAATATTGGAGGCGGTCTTGGTATTGATTATTACCATACGGGCACTATCCTTCCTACACCTCGCGATCTCATTGACACAGTGCGGGAGCTTGTGTTGTCGCGAAATCTTAATCTTATAATTGAACCTGGAAGGTCGTTGATTGCAAATACTTGTTGTCTTGTGAACCGTGTCACGGGTGTTAAAACAAATGGCACGAAGAACTTTATTGTGATTGATGGTAGCATGGCTGAACTTATTCGTCCTAGCCTCTATGATGCTTATCAACACATAGAACTTGTTTCACCTCCATCACCTGATTCCGCGGTTTCCACTTTTGATGTTGTGGGCCCCGTTTGCGAATCGGCCGATTTTTTGGGGAAGGACAGGGACCTTCCGGCTCCAGCCAGTGGTTCTGGGCTTGTAGTTCATGATGCAGGTGCATATTGTATGAGCATGGCTTCAACTTACAACCTCAAGATGCGCCCACCTGAGTACTGGGTTGATGAAGATGGATCGGTGGCAAAAATCAGGCATGCGGAAACTTTTGAAGATCATATGAGATTCTTTGAGGGACTTTAG 1614 42.94 MGINADALCEFWHTFDFDQDNSLIQSLGELNMYLSIYLTCKNPCSYLDRKHCTTHPSSMAAASSSHLQFQSLSFAKTLNQSSKRITPKTLISYKPGSKTLAIRAVISQNPVETQTFQHCFTKKDDGYLYCEGLKVQEVMEAVEKRPFYLYSKPQITRNVEAYKDALKGLNSIIGYAIKANNNFLILQHLKNLGCGAVLVSGNELRLAIRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFVNIDSEFDLDNIVSAARIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKSYPDELKLVGAHCHLGSTITKVDIFRDAASIMVKFIDEIRAQGFDINYLNIGGGLGIDYYHTGTILPTPRDLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNRVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPPSPDSAVSTFDVVGPVCESADFLGKDRDLPAPASGSGLVVHDAGAYCMSMASTYNLKMRPPEYWVDEDGSVAKIRHAETFEDHMRFFEGL 537
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cich4g04172 537 Pfam Pyridoxal-dependent decarboxylase, C-terminal sheet domain 401 491 IPR022643 GO:0003824(InterPro)
Cich4g04172 537 PRINTS Ornithine-diaminopimelate-arginine (ODA) decarboxylase family signature 390 409 IPR000183 GO:0003824(InterPro)
Cich4g04172 537 PRINTS Ornithine-diaminopimelate-arginine (ODA) decarboxylase family signature 195 207 IPR000183 GO:0003824(InterPro)
Cich4g04172 537 PRINTS Ornithine-diaminopimelate-arginine (ODA) decarboxylase family signature 491 504 IPR000183 GO:0003824(InterPro)
Cich4g04172 537 PRINTS Ornithine-diaminopimelate-arginine (ODA) decarboxylase family signature 175 193 IPR000183 GO:0003824(InterPro)
Cich4g04172 537 PRINTS Ornithine-diaminopimelate-arginine (ODA) decarboxylase family signature 308 321 IPR000183 GO:0003824(InterPro)
Cich4g04172 537 ProSitePatterns Orn-DAP-Arg decarboxylases family 2 pyridoxal-P attachment site. 175 193 IPR022653 -
Cich4g04172 537 PRINTS Diaminopimelate decarboxylase signature 193 210 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Cich4g04172 537 PRINTS Diaminopimelate decarboxylase signature 501 523 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Cich4g04172 537 PRINTS Diaminopimelate decarboxylase signature 418 436 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Cich4g04172 537 PRINTS Diaminopimelate decarboxylase signature 281 290 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Cich4g04172 537 Pfam Pyridoxal-dependent decarboxylase, pyridoxal binding domain 154 400 IPR022644 GO:0003824(InterPro)
Cich4g04172 537 SUPERFAMILY Alanine racemase C-terminal domain-like 375 532 IPR009006 GO:0003824(InterPro)
Cich4g04172 537 ProSitePatterns Orn-DAP-Arg decarboxylases family 2 signature 2. 344 359 IPR022657 -
Cich4g04172 537 Gene3D Lyase, Ornithine Decarboxylase; Chain A, domain 1 135 531 IPR009006 GO:0003824(InterPro)
Cich4g04172 537 SUPERFAMILY PLP-binding barrel 145 401 IPR029066 -
Cich4g04172 537 FunFam Diaminopimelate decarboxylase 152 397 - -
Cich4g04172 537 NCBIfam diaminopimelate decarboxylase 122 531 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Cich4g04172 537 Hamap Diaminopimelate decarboxylase [lysA]. 132 535 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Cich4g04172 537 CDD PLPDE-III-DapDC 146 512 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Cich4g04172 537 PANTHER DIAMINOPIMELATE DECARBOXYLASE 112 534 - GO:0008836(PANTHER)|GO:0009089(PANTHER)|GO:0009507(PANTHER)
Cich4g04172 537 FunFam Diaminopimelate decarboxylase 388 531 - -
Cich4g04172 537 Gene3D Alanine racemase 152 397 IPR029066 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cich4g04172 K01586 diaminopimelate decarboxylase [EC:4.1.1.20]