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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cich4g04205 ATGACTCAAATTAGCAGAAAAATGTATCAATTAAACCTCAAGAGAACGATTATCTGGCGTTTAGCTCTTCTCCGGCGATGTGCTAGATCTCTCTGGCACCAAATTCTTGCTTGTTGGATCGGAAAGTCTGTCCGGTACCGGCAATTGTTACACACCGGCCCTTTGATTCCGACGTCTCATCGGCGTTCTTCTCCGACGGAGACTACGACAACGACGATCGACATGGCCACCGTGTGCCACCAGTTTCCATCCGAAGAACTGACGGCCTCTAGCGGCGAAATGTCGTCGTCCTCCGGCGGCTCCGATCATGATCAAGATGCTTCCGATTTGGTGGCTTTGAAGATTAGTCTGTTGGGTGATCATCATATCGGAAAAACAAGCTTCTTGTCGAAGTACGTTGGAAAAGAAAAGAATCAAGAAGAATTACAAAAGAAAGGCATAAATCACATGGATAAAATACTGTGTGTTAAAGGAGCCAGAATTTCCTACACAATTTGGGAAGTCGGCTGTGATGCATTTTGCCCAGATGGTGATTTAAGAACATCAATTCCTGCTGCTTGTAAAGACTCGGTAGCTATTTTGTTCATGTTCGATCTAACGAGTCGTTGTACACTTAATAGTGTTATCAATTGGCATCAACAAGCTAGGACTTATAATCAGACCGCTATTCCGGTGATGGTTGGGAGCAAATTTGATGAATTCGTGAAGCTTCCATTAGATTTACAGTGGACGATCGCAAACCAGGCAAGAGCGTATGCAAAGGCTATAAATGCAACGTTATTCTTCTCAAGTGCATCTTACAATATAAACGTAAATAAAATCTTCAAATTCGTAACTGCGAAGCTTTTTGACTTGCCATGGACTTTGGAACGAAATCTTACAATTGGCGAGCCGATTATTGACTTTTAA 909 42.79 MTQISRKMYQLNLKRTIIWRLALLRRCARSLWHQILACWIGKSVRYRQLLHTGPLIPTSHRRSSPTETTTTTIDMATVCHQFPSEELTASSGEMSSSSGGSDHDQDASDLVALKISLLGDHHIGKTSFLSKYVGKEKNQEELQKKGINHMDKILCVKGARISYTIWEVGCDAFCPDGDLRTSIPAACKDSVAILFMFDLTSRCTLNSVINWHQQARTYNQTAIPVMVGSKFDEFVKLPLDLQWTIANQARAYAKAINATLFFSSASYNINVNKIFKFVTAKLFDLPWTLERNLTIGEPIIDF 302
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cich4g04205 302 PANTHER - 111 301 - GO:0003924(PANTHER)|GO:0005525(PANTHER)
Cich4g04205 302 Gene3D - 101 291 IPR027417 -
Cich4g04205 302 ProSiteProfiles small GTPase Rab1 family profile. 104 302 - -
Cich4g04205 302 SMART rab-sub-5 113 285 - -
Cich4g04205 302 FunFam Septum-promoting GTP-binding protein 1 103 292 - -
Cich4g04205 302 Pfam Ras family 114 281 IPR001806 GO:0003924(InterPro)|GO:0005525(InterPro)
Cich4g04205 302 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 113 294 IPR027417 -
Cich4g04205 302 PRINTS Transforming protein P21 ras signature 220 233 - -
Cich4g04205 302 PRINTS Transforming protein P21 ras signature 260 282 - -
Cich4g04205 302 PRINTS Transforming protein P21 ras signature 113 134 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cich4g04205 K07976 Rab family, other
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cich Cich-Chr4:122964983 Cich9g00105 Cich-Chr9:3044167 dispersed