AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cich4g04213 | ATGCATATAACCGGACCTCACTCCTCAGCTCTCCTTCGTCGAGCTTCTAGGTCCTCAGCCACCAGACTTCACTCTTCTCTTTCAAGTAAATCTCCTGCGCCGTCGCCTTCACCGGTCGCGTCTCAGTCCCGATCTCATACCACCGCATCGGCCGCTTTCCGTTCTGTCCGATCTCGATGGAGCCACGGTGTTGATTGGAAGTCTCCTGCTTCGCTGTCTTCTCAGATCAGAACTACTGCTTCTCCTGTTCTTGATCGTTTCCACCGTAGTCTCGCCACCATGGCCTCTGATCATACTTTCAGTGGGATTCTGACTGGTCTCCCGAAGCCTGGAGGTGGGGAGTTTGGAAAGTTCTATAGTTTGCCTGCGCTAAATGATCCAAGAGTTGACAAGCTGCCATATTCAATTAGGATCCTTCTAGAATCAGCCATCCGTAATTGTGACAATTTCCAAGTCACTAAGGAAGATGTCGAGAAAATCATTGATTGGGAAAAAACTTCCCCAAAGCAAGTTGAGATTCCATTCAAGCCAGCTCGTGTTCTGTTACAGGATTTTACTGGTGTTCCAGCTGTGGTTGACCTTGCGTGTATGCGTGATGCCATGAACAATCTTGGTGGCAACTCCGAAAAAATCAATCCTCTGGTTCCTGTGGATCTTGTTGTTGATCATTCTGTTCAAGTAGATGTTGCTAGGTCTGAAAATGCAGTACAAGCAAACATGGAACTTGAGTTTCAGAGAAACAAGGAAAGATTTGCTTTTCTTAAGTGGGGTTCCAAAGCTTTCCAAAACATGCTTGTGGTCCCACCAGGATCTGGTATTGTCCACCAGGTGAATCTTGAATATCTTGGACGCGTTGTTTTCAACACTGATGGAATGCTGTACCCTGATAGTGTTGTGGGAACCGATTCCCACACAACTATGATTGATGGGTTAGGTGTTGCTGGTTGGGGAGTTGGTGGAATTGAAGCAGAAGCCACTATGCTTGGCCAGCCAATGAGCATGGTTTTACCTGGTGTTGTGGGGTTCAAATTATCAGGGAAACTCCGCAATGGTGTAACAGCTACTGATTTGGTGTTGACTGTCACCCAAATGTTAAGAAAGCATGGTGTTGTAGGCAAATTTGTTGAATTTCACGGGGATGGTGTTGGTAAAATATCACTTGCTGACAGGGCAACAATCGCCAACATGTCTCCGGAGTACGGTGCTACCATGGGGTTCTTCCCAGTGGATCATGTCACTCTTCAGTATCTCAAGTTAACTGGCAGAAGCGATGATACAGTGGCTATGATAGAAGCATACTTACGTGCCAACAATATGTTTGTTGATTATAGCCAGCCACAACAAGAAAGAGTCTACTCATCTTACTTGGAACTAGATCTTTCAGAAGTAGAACCTTGTATTTCAGGGCCAAAGAGACCTCATGACCGTGTTCCTTTGAAAGACATGAAAGCAGATTGGCATTCTTGCCTTGATAATAAAGTGGGATTCAAGGGATTTGCTGTACCAAAAGAGACACAAGACAAAGTTGTAAAGTTTTCATTTCATGGACAGCCAGCAGAACTTAGACATGGGAGTGTTGTGATTGCTGCCATTACAAGTTGCACAAATACATCAAACCCTAGTGTCATGCTTGGTGCAGGTCTTGTTGCCAAAAAGGCCTGTGAATTAGGTCTACAGGTCAAACCATGGGTCAAGACAAGTCTTGCTCCAGGTTCTGGAGTCGTTACAAAATATTTGCTCCAAAGTGGGCTTCAAAAGTATTTAAATGAGCAAGGGTTCAACATTGTTGGATATGGATGCACGACATGTATTGGCAATTCAGGGGAATTGGATGAATCAGTTGGTGCAGCTATAGCTGAAAATGATATCATTGCATCTGCTGTTCTTTCTGGGAATAGAAACTTTGAGGGACGTGTTCATGCCTTGACAAGAGCAAATTATCTTGCATCACCTCCTTTGGTTGTTGCCTATGCCCTTGCTGGCACGGTTGATATCGATTTCGAGACTGAACCAATTGGAGTTGGAAAAGATGGAAAGGATGTTTACTTCAGAGACATCTGGCCAACTACCGAAGAAATCGCAGACGCGGTTCAATCGAGTGTTCTTCCTGAAATGTTCAAGAGCACATACAAATCCATCACCGAAGGAAACCCCATGTGGAATGACCTTTCTGTCCCTCAATCAAAACTCTACTCATGGGACCCAACTTCCACCTACATTCACGAACCCCCGTATTTCAAAAACATGACAATGGACCCCCCTGGCGCCCACGGAGTCAAAGACGCCTACTGCCTACTCAACTTCGGTGACAGTATCACAACCGATCACATCTCGCCAGCTGGCAGTATCCACAAGGACAGCCCCGCCGCAAAGTTTCTTCTAGAACGCGGTGTCGATCGTAAGGATTTCAATTCTTACGGTAGTCGACGCGGTAACGATGAAATTATGGCCAGGGGTACTTTCGCCAATATCCGTATCGTCAATAAGCTCTTGAACGGAGAAGTTGGCCCCAAAACCGTCCATATTCCTTCCGGAGAGAAATTATCCGTCTTTGATGCTGCATCGAAATACAAGGAGGCTGGCCAAGATACAATTGTGTTGGCTGGAGCAGAGTACGGAAGCGGAAGCTCCCGAGATTGGGCCGCCAAGGGCCCTATGTTATTGGGGGTTAAAGCGGTAATTGCAAAAAGCTTCGAGAGAATCCATCGCAGTAATTTGGTAGGAATGGGTATTATCCCACTTTGCTTCAAATCCGGTGAAGATGCAGACACACTCGGTTTGACCGGTCATGAAAGATTCACCATTGACTTACCAAGCAACATTTCCGAAATCCGCCCCGGTCAAGACGTCACCGTCACTACCGATTCCGGAAAATCGTTCACGTGTACTGTCCGCTTCGACACCGAGGTGGAATTGGCGTATTTCAATCATGGTGGGATTCTGCCGTATGTTATCCGACAACTATCGGCGCAAAAATGA | 2979 | 46.12 | MHITGPHSSALLRRASRSSATRLHSSLSSKSPAPSPSPVASQSRSHTTASAAFRSVRSRWSHGVDWKSPASLSSQIRTTASPVLDRFHRSLATMASDHTFSGILTGLPKPGGGEFGKFYSLPALNDPRVDKLPYSIRILLESAIRNCDNFQVTKEDVEKIIDWEKTSPKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNNLGGNSEKINPLVPVDLVVDHSVQVDVARSENAVQANMELEFQRNKERFAFLKWGSKAFQNMLVVPPGSGIVHQVNLEYLGRVVFNTDGMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEATMLGQPMSMVLPGVVGFKLSGKLRNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGVGKISLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVAMIEAYLRANNMFVDYSQPQQERVYSSYLELDLSEVEPCISGPKRPHDRVPLKDMKADWHSCLDNKVGFKGFAVPKETQDKVVKFSFHGQPAELRHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFNIVGYGCTTCIGNSGELDESVGAAIAENDIIASAVLSGNRNFEGRVHALTRANYLASPPLVVAYALAGTVDIDFETEPIGVGKDGKDVYFRDIWPTTEEIADAVQSSVLPEMFKSTYKSITEGNPMWNDLSVPQSKLYSWDPTSTYIHEPPYFKNMTMDPPGAHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPAAKFLLERGVDRKDFNSYGSRRGNDEIMARGTFANIRIVNKLLNGEVGPKTVHIPSGEKLSVFDAASKYKEAGQDTIVLAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKSGEDADTLGLTGHERFTIDLPSNISEIRPGQDVTVTTDSGKSFTCTVRFDTEVELAYFNHGGILPYVIRQLSAQK | 992 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cich4g04213 | 992 | NCBIfam | aconitate hydratase AcnA | 116 | 988 | IPR006249 | - | |
| Cich4g04213 | 992 | MobiDBLite | consensus disorder prediction | 1 | 48 | - | - | |
| Cich4g04213 | 992 | PRINTS | Aconitase family signature | 293 | 306 | IPR001030 | - | |
| Cich4g04213 | 992 | PRINTS | Aconitase family signature | 592 | 605 | IPR001030 | - | |
| Cich4g04213 | 992 | PRINTS | Aconitase family signature | 240 | 253 | IPR001030 | - | |
| Cich4g04213 | 992 | PRINTS | Aconitase family signature | 465 | 479 | IPR001030 | - | |
| Cich4g04213 | 992 | PRINTS | Aconitase family signature | 530 | 541 | IPR001030 | - | |
| Cich4g04213 | 992 | PRINTS | Aconitase family signature | 383 | 396 | IPR001030 | - | |
| Cich4g04213 | 992 | PRINTS | Aconitase family signature | 307 | 322 | IPR001030 | - | |
| Cich4g04213 | 992 | PRINTS | Aconitase family signature | 264 | 272 | IPR001030 | - | |
| Cich4g04213 | 992 | PRINTS | Aconitase family signature | 369 | 382 | IPR001030 | - | |
| Cich4g04213 | 992 | Pfam | Aconitase C-terminal domain | 790 | 917 | IPR000573 | - | |
| Cich4g04213 | 992 | Gene3D | Aconitase, domain 4 | 754 | 990 | IPR015928 | - | |
| Cich4g04213 | 992 | Gene3D | Aconitase, domain 3 | 99 | 465 | IPR015931 | - | |
| Cich4g04213 | 992 | CDD | AcnA-IRP-Swivel | 767 | 937 | IPR044137 | - | |
| Cich4g04213 | 992 | FunFam | cytoplasmic aconitate hydratase | 466 | 689 | - | - | |
| Cich4g04213 | 992 | ProSitePatterns | Aconitase family signature 1. | 526 | 542 | IPR018136 | - | |
| Cich4g04213 | 992 | Pfam | Aconitase family (aconitate hydratase) | 158 | 661 | IPR001030 | - | |
| Cich4g04213 | 992 | SUPERFAMILY | LeuD-IlvD-like | 730 | 987 | - | - | |
| Cich4g04213 | 992 | Gene3D | Aconitase, domain 3 | 466 | 689 | IPR015931 | - | |
| Cich4g04213 | 992 | MobiDBLite | consensus disorder prediction | 11 | 48 | - | - | |
| Cich4g04213 | 992 | SUPERFAMILY | Aconitase iron-sulfur domain | 112 | 726 | IPR036008 | - | |
| Cich4g04213 | 992 | CDD | AcnA-IRP | 179 | 663 | - | - | |
| Cich4g04213 | 992 | Gene3D | - | 690 | 751 | - | - | |
| Cich4g04213 | 992 | FunFam | Aconitate hydratase | 98 | 465 | - | - | |
| Cich4g04213 | 992 | ProSitePatterns | Aconitase family signature 2. | 592 | 605 | IPR018136 | - | |
| Cich4g04213 | 992 | FunFam | Aconitate hydratase | 753 | 990 | - | - | |
| Cich4g04213 | 992 | PANTHER | ACONITASE-IRON-RESPONSIVE ELEMENT FAMILY MEMBER | 97 | 989 | IPR006249 | GO:0003994(PANTHER)|GO:0005739(PANTHER)|GO:0005829(PANTHER)|GO:0006099(PANTHER)|GO:0006101(PANTHER)|GO:0030350(PANTHER)|GO:0051539(PANTHER) |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cich4g04213 | K01681 | aconitate hydratase [EC:4.2.1.3] | ||||
| Cich4g04213 | K27802 | aconitate hydratase A / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99] |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 63004 | Cich4g04213 | Cich7g00348 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Cich | Cich-Chr4:123263132 | Cich6g02336 | Cich-Chr6:34918140 | dispersed | |
| Cich | Cich-Chr2:705619 | Cich4g04213 | Cich-Chr4:123263132 | transposed | |
| Cich | Cich-Chr7:25974024 | Cich4g04213 | Cich-Chr4:123263132 | transposed | |
| Cich | Cich-Chr7:95117819 | Cich4g04213 | Cich-Chr4:123263132 | transposed | |
| Cich | Cich-Chr8:41615807 | Cich4g04213 | Cich-Chr4:123263132 | transposed | |
| Cich | Cich-Chr8:42081683 | Cich4g04213 | Cich-Chr4:123263132 | transposed | |
| Cich | Cich-Chr4:123263132 | Cich7g00348 | Cich-Chr7:10341523 | wgd |