AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cich4g04236 ATGACTGAAACAATGATCGATGACAACTATCACGCAGTTCTAGACATGGGTGCCATATTCAAAGCAAGCTTCCTCTTTTCATTCCTACTGTTTCTTCTCTCACCTCCTGCATATTCATCTTCTAATGGAGGATTAGTTAGAGTTGGATTAAAAAAGAGAAAAATCAACCAACTGAGTGAACATTCAGCCTCAAATGATGTAAATTCCAGAAGAAATTCTGGACTCCATGGTAACTTTAAAGATTCAAACAGTGACATAATTTCTCTAAAAAACTACATGGATGCTCAGTATTATGGTGAGATTGGTATTGGCACTCCACCTCAAAAGTTCACTGTCATTTTTGACACTGGAAGTTCTAATCTTTGGGTACCTTCTACAAAGTGCCACTTCTCAGTTGCTTGCCTTTTTCACCCAAAATATAAGTCTAGCCAATCAGCTACCTATAAGAAAAATGGAAAATCTGCTGCAATTCAATATGGAACTGGCGCTATCTCTGGTTTCTTTAGCCAAGATTCTATAAAACTTGGTGACTTTACCATCAAAGAACAGGATTTTATAGAAGCAACAAAAGAACCAGGCATCACTTTCGTGGCAGCAAAATTTGATGGAATTCTTGGCCTTGGGTTTCAAGAAATCTCTGTTGGTGATGCCCTTCCTGTTTGGTACAATATGGTTGACCAAGGTCTTGTTCAAGAACCCGTATTTTCATTTTGGCTTAATCGCAATACAAAGGATGATGAAGGAGGTGAACTTGTATTTGGTGGTGTTGATACTAATCATTTTGTAGGTCAACATACTTATGTCCCTGTTACTCAAAAGGGCTATTGGCAGTTTGAAATGAATGATGTTCTCATTGGTGACGAATCAACCGGATTTTGCACCAATGGTTGTTCAGCAATTGCGGATTCTGGAACCTCTTTGTTGGCTGGTCCAACGACTATTGTCACTCAAATCAATCAAGCCATTGGTGCTTCGGGTGTCATGAGCAACGAATGCAAAGCTTTGATCGATGAGTATGGAAAATCTATTCTCGATATGCTCGTATCTCAGACAAAACCTGAAAAAGTCTGCGCCCAAATGAATTTATGTGCGTCTGATGGCTCTCATGATACTAGTATCTTAATCGAAAATGTGGTAGACAAAAACAATGGAAAATCTTCGGGTTTAGACAATCAAATGTGTAGTTTCTGTCAAATGGCGGTTTTTTGGATTGAACAAGAACTCAAGAAAAATAAGACTGAGGATGCCATAATCAATTACGTTGACCAGCTTTGTGAAAAGTTACCAAGTCCAGGAGGTGAATCTACAGTTAACTGTAATAAGCTTTCTTCCATGCCAAATATTGCTTTTACTATTGGTGGTAAAACTTTTAACCTCTCACCTGAACAGTATATTTTAAAAGTTGGTGAGGGAGAAAAAGCACAATGCATCAGTGGATTTAGTGCAATCGATGTACCACCTCCTCGCGGACCTCTATGGATTCTTGGAGATGTTTTTATGGGTAAATATCATACGGTGTTTGACTATGGTAACTTACAAGTCGGATTTGCTGAAGCAATATGA 1563 38.52 MTETMIDDNYHAVLDMGAIFKASFLFSFLLFLLSPPAYSSSNGGLVRVGLKKRKINQLSEHSASNDVNSRRNSGLHGNFKDSNSDIISLKNYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTKCHFSVACLFHPKYKSSQSATYKKNGKSAAIQYGTGAISGFFSQDSIKLGDFTIKEQDFIEATKEPGITFVAAKFDGILGLGFQEISVGDALPVWYNMVDQGLVQEPVFSFWLNRNTKDDEGGELVFGGVDTNHFVGQHTYVPVTQKGYWQFEMNDVLIGDESTGFCTNGCSAIADSGTSLLAGPTTIVTQINQAIGASGVMSNECKALIDEYGKSILDMLVSQTKPEKVCAQMNLCASDGSHDTSILIENVVDKNNGKSSGLDNQMCSFCQMAVFWIEQELKKNKTEDAIINYVDQLCEKLPSPGGESTVNCNKLSSMPNIAFTIGGKTFNLSPEQYILKVGEGEKAQCISGFSAIDVPPPRGPLWILGDVFMGKYHTVFDYGNLQVGFAEAI 520
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cich4g04236 520 Pfam Eukaryotic aspartyl protease 96 519 IPR033121 -
Cich4g04236 520 Pfam Saposin-like type B, region 1 393 429 IPR007856 GO:0006629(InterPro)
Cich4g04236 520 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 112 123 IPR001969 GO:0004190(InterPro)|GO:0006508(InterPro)
Cich4g04236 520 ProSiteProfiles Saposin B type domain profile. 327 367 IPR008139 -
Cich4g04236 520 PANTHER BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED 29 519 IPR001461 GO:0004190(PANTHER)|GO:0004190(InterPro)|GO:0006508(InterPro)|GO:0006508(PANTHER)
Cich4g04236 520 Pfam Saposin-like type B, region 2 331 363 IPR008138 -
Cich4g04236 520 PRINTS Pepsin (A1) aspartic protease family signature 493 508 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Cich4g04236 520 PRINTS Pepsin (A1) aspartic protease family signature 299 310 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Cich4g04236 520 PRINTS Pepsin (A1) aspartic protease family signature 103 123 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Cich4g04236 520 PRINTS Pepsin (A1) aspartic protease family signature 249 262 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Cich4g04236 520 ProSiteProfiles Saposin B type domain profile. 390 431 IPR008139 -
Cich4g04236 520 FunFam Vacuolar aspartic proteinase 411 519 - -
Cich4g04236 520 FunFam Lysosomal aspartic protease 83 325 - -
Cich4g04236 520 Gene3D Acid Proteases 256 519 IPR021109 -
Cich4g04236 520 SUPERFAMILY Saposin 328 429 IPR011001 -
Cich4g04236 520 SMART sapb-4 291 363 IPR008139 -
Cich4g04236 520 SMART sapb-4 392 476 IPR008139 -
Cich4g04236 520 ProSiteProfiles Peptidase family A1 domain profile. 97 517 IPR033121 -
Cich4g04236 520 Gene3D - 327 429 - -
Cich4g04236 520 SUPERFAMILY Acid proteases 25 519 IPR021109 -
Cich4g04236 520 CDD phytepsin 87 518 IPR033869 GO:0004190(InterPro)
Cich4g04236 520 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 299 310 IPR001969 GO:0004190(InterPro)|GO:0006508(InterPro)
Cich4g04236 520 Gene3D Acid Proteases 46 255 IPR021109 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cich4g04236 K08245 phytepsin [EC:3.4.23.40]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cich Cich-Chr3:34112165 Cich4g04236 Cich-Chr4:124086574 dispersed
Cich Cich-Chr3:34196104 Cich4g04236 Cich-Chr4:124086574 dispersed
Cich Cich-Chr4:108051665 Cich4g04236 Cich-Chr4:124086574 dispersed
Cich Cich-Chr4:124086574 Cich5g04439 Cich-Chr5:125045858 dispersed