AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cich4g04242 ATGGCATTGAATAGAGCTGGATCGTGTAATCCGGCCGTCGTGAAGATCGGAATTACGTTCTTGGGACTCTGCTTGGTGGGTTATTTACTAGGTCCACCTTTATACTGGCACGTTCTTGAAGGATTAGCCGCCGTCCGTCGCTCCTCCTCCGCCGCTTCCTGTCCTCCCTGCAACTGCGACTGCGATTCTCAGCCGCTCCTCTCCATTCCTCAAGCTTTAAGCAACGGTTCCTTCACAGATTGTGCAAAACACGACCCCGATGTAACCGGAGACACAGAAAAGAATTTCGCCGAGCTTCTATCCGAAGAATTAAAGCTTCGTGAAGCGGAATCTTTAGAAAGCCAACAACGTGCTGACATGGCACTCTTGGAGGCAAAAAAACTAACATCTCAATATCAAAAAGAAGCGGATAAATGCAATTCAGGAATGGAAACATGTGAAGAAGCGCGTGAAAAAGCGGAAGCTGCTTTATTATCACAAAAACAACAAAGTCAAATGTGGGAATTAAGAGCGCGACAAAAAGGCTGGAAAGAAGGTGGCAATACAAAGTCTGTAAACACCATATGA 567 46.21 MALNRAGSCNPAVVKIGITFLGLCLVGYLLGPPLYWHVLEGLAAVRRSSSAASCPPCNCDCDSQPLLSIPQALSNGSFTDCAKHDPDVTGDTEKNFAELLSEELKLREAESLESQQRADMALLEAKKLTSQYQKEADKCNSGMETCEEAREKAEAALLSQKQQSQMWELRARQKGWKEGGNTKSVNTI 188
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cich4g04242 188 PANTHER EXPRESSED PROTEIN 1 184 - -
Cich4g04242 188 Coils Coil 106 126 - -
Cich4g04242 188 MobiDBLite consensus disorder prediction 169 188 - -
Cich4g04242 188 Pfam Protein of unknown function (DUF1068) 12 179 IPR010471 -
Cich4g04242 188 Coils Coil 143 163 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cich4g04242 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cich Cich-Chr2:142109693 Cich4g04242 Cich-Chr4:124408328 dispersed
Cich Cich-Chr4:124408328 Cich7g03678 Cich-Chr7:114518860 dispersed