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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cich4g04259 ATGGCGAAGACAAAGCCTGGAAAGAAAGATGTAGATACTTACACTATCAAGGGAACCAACAAAGTCGTTAGACCTGGAGACTGTGTATTGATGAGGCCTGCAGATTCAGATAAGCCTCCATATGTAGCGCGCGTGGAAAAGCTCGAAGCTGATCACCGGAACAATGTGAAGGTAAGAGTTAGGTGGTATTACCGGCCAGAAGAGTCAATCGGAGGAAGGAGACAATTTCATGGCGTCAAGGAGCTGTTTCTCTCCGATCATTACGACATGCAAAGTGCTCATACAATCGAAGGGAAATGCATCGTTCATTCGTTCAAAAACTACACAAAGCTCGACAATGTCGGCACTGAAGACTATTTCTGTCGTTTTGAATACAAGGCGGCTACCGGTGGTTTCACCCCTGATCGTGTTGCTGTGTATTGCAAGTGTGAGATGCCCTACAACCCCGATGATTTGATGGTACAATGTGAAGGATGCAAAGACTGGTTTCATCCATCTTGTATGGGGATGACAATTGAAGAAGCAAAGAAATTGGAGCAGTTTTTGTGCTCTGATTGTTCTTCTGATGATGATGCAAAAGGGGCATTAAACTCGTTCCCAATTTCACCTGAAGCTAAGATTGAGGCTAAACGCAGAAAGCAGAGATGA 648 44.6 MAKTKPGKKDVDTYTIKGTNKVVRPGDCVLMRPADSDKPPYVARVEKLEADHRNNVKVRVRWYYRPEESIGGRRQFHGVKELFLSDHYDMQSAHTIEGKCIVHSFKNYTKLDNVGTEDYFCRFEYKAATGGFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLEQFLCSDCSSDDDAKGALNSFPISPEAKIEAKRRKQR 215
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cich4g04259 215 ProSiteProfiles BAH domain profile. 21 136 IPR001025 GO:0003682(InterPro)
Cich4g04259 215 Gene3D Zinc-RING finger domain, C3HC4 (zinc finger) 133 198 IPR013083 -
Cich4g04259 215 FunFam Chromatin remodeling protein EBS 1 132 - -
Cich4g04259 215 SUPERFAMILY FYVE-PHD zinc finger 130 188 IPR011011 -
Cich4g04259 215 CDD BAH-BAHCC1 22 156 - -
Cich4g04259 215 Gene3D - 1 132 IPR043151 -
Cich4g04259 215 Pfam BAH domain 23 134 IPR001025 GO:0003682(InterPro)
Cich4g04259 215 FunFam Bromo-adjacent homology (BAH) domain-containing protein 133 204 - -
Cich4g04259 215 PANTHER OS08G0421900 PROTEIN 1 206 - -
Cich4g04259 215 ProSiteProfiles Zinc finger PHD-type profile. 138 189 IPR019787 -
Cich4g04259 215 ProSitePatterns Zinc finger PHD-type signature. 141 186 IPR019786 -
Cich4g04259 215 SMART BAH-4 21 136 IPR001025 GO:0003682(InterPro)
Cich4g04259 215 SMART PHD-3 140 187 IPR001965 -
Cich4g04259 215 Pfam PHD-finger 141 186 IPR019787 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cich4g04259 K25868 chromatin remodeling protein
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Event-related genes

Select Gene_1 Gene_2 Event_name
63012 Cich4g04259 Cich7g00370
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cich Cich-Chr4:124700820 Cich5g04424 Cich-Chr5:124864462 dispersed
Cich Cich-Chr4:124700820 Cich7g00370 Cich-Chr7:10903802 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cich9g00841 ACH 1014 1294 Core DNA Replication Machinery family AT1G08840 29.352 2.67e-19 92.8
Cich9g01153 . 888 1283 Core DNA Replication Machinery family AT1G08840 30.269 1.70e-37 152.0
Cich9g01901 . 1 725 Core DNA Replication Machinery family AT4G19130 51.696 0.0 731.0
Cich9g02608 . 430 653 Core DNA Replication Machinery family AT5G63960 72.768 4.99e-103 321.0
Cich8g00287 . 4 620 Core DNA Replication Machinery family AT1G67630 55.592 0.0 691.0
Cich8g00345 . 20 928 Core DNA Replication Machinery family AT1G44900 75.791 0.0 1392.0
Cich8g00428 . 70 230 Core DNA Replication Machinery family AT1G79150 34.132 1.63e-09 56.6
Cich8g01102 . 24 247 Core DNA Replication Machinery family AT1G77470 22.182 5.94e-07 50.1
Cich8g01103 . 185 240 Core DNA Replication Machinery family AT5G41880 56.14 2.77e-12 59.7
Cich8g02895 . 19 260 Core DNA Replication Machinery family AT5G26680 30.612 5.30e-20 91.3
Cich8g03093 . 382 448 Core DNA Replication Machinery family AT5G46280 79.104 1.03e-29 111.0
Cich7g00370 ACH 245 341 Core DNA Replication Machinery family AT4G14700 32.323 4.58e-10 57.0
Cich7g00394 . 207 259 Core DNA Replication Machinery family AT2G16440 72.727 5.93e-19 83.2
Cich7g00516 . 383 414 Core DNA Replication Machinery family AT1G07270 75.0 1.10e-09 55.1
Cich7g00523 . 383 411 Core DNA Replication Machinery family AT1G07270 75.862 3.60e-09 52.8
Cich7g01438 . 242 366 Core DNA Replication Machinery family AT2G07690 68.0 2.36e-53 175.0
Cich7g01466 . 166 214 Core DNA Replication Machinery family AT4G14700 44.898 5.38e-09 56.2
Cich7g01601 . 1 182 Core DNA Replication Machinery family AT3G55490 63.187 5.60e-84 244.0
Cich7g02102 . 1 774 Core DNA Replication Machinery family AT5G46280 68.408 0.0 1065.0
Cich7g02205 . 175 243 Core DNA Replication Machinery family AT5G41880 72.464 2.25e-32 116.0
Cich7g02339 . 1 264 Core DNA Replication Machinery family AT5G26680 27.138 2.48e-19 89.4
Cich7g02432 . 364 670 Core DNA Replication Machinery family AT4G19130 22.741 3.55e-11 63.5
Cich7g02440 . 1 360 Core DNA Replication Machinery family AT5G26680 84.167 0.0 645.0
Cich7g02946 . 1 403 Core DNA Replication Machinery family AT2G01120 63.524 0.0 527.0
Cich7g03143 . 12 332 Core DNA Replication Machinery family AT1G63160 92.523 0.0 622.0
Cich7g03648 . 4 534 Core DNA Replication Machinery family AT4G29910 59.404 0.0 620.0
Cich6g00699 . 1 209 Core DNA Replication Machinery family AT3G12530 59.809 6.98e-90 261.0
Cich6g00944 . 20 103 Core DNA Replication Machinery family AT1G44900 48.837 2.30e-10 54.3
Cich6g01085 . 154 294 Core DNA Replication Machinery family AT5G27740 41.844 5.80e-37 127.0
Cich6g01279 . 1 296 Core DNA Replication Machinery family AT2G25100 73.401 8.91e-168 465.0
Cich6g01395 . 1 354 Core DNA Replication Machinery family AT5G27740 88.701 0.0 667.0
Cich6g01494 . 16 809 Core DNA Replication Machinery family AT4G14700 61.933 0.0 997.0
Cich6g01720 . 129 169 Core DNA Replication Machinery family AT2G25100 75.61 4.82e-13 66.6
Cich6g01841 . 141 251 Core DNA Replication Machinery family AT5G26680 36.937 2.23e-12 69.3
Cich6g01857 . 1127 1245 Core DNA Replication Machinery family AT4G02110 29.839 3.66e-06 48.5
Cich6g01858 . 1127 1245 Core DNA Replication Machinery family AT4G02110 31.452 1.36e-06 49.3
Cich6g02034 . 111 199 Core DNA Replication Machinery family AT4G02110 38.889 1.56e-13 71.6
Cich6g02107 . 11 1522 Core DNA Replication Machinery family AT5G67100 58.115 0.0 1732.0
Cich6g02461 . 1015 1267 Core DNA Replication Machinery family AT1G08840 28.214 2.65e-20 95.1
Cich6g02466 ACH 1141 1267 Core DNA Replication Machinery family AT1G08840 30.216 4.07e-10 61.6
Cich6g03238 . 148 207 Core DNA Replication Machinery family AT1G26840 53.125 3.95e-13 66.2
Cich6g03663 . 1577 1765 Core DNA Replication Machinery family AT2G27120 46.032 2.24e-46 159.0
Cich6g03785 . 18 526 Core DNA Replication Machinery family AT5G22110 60.547 0.0 618.0
Cich6g04152 . 298 414 Core DNA Replication Machinery family AT1G07270 58.974 5.79e-40 139.0
Cich6g04260 . 4 326 Core DNA Replication Machinery family AT1G21690 25.41 3.40e-23 99.8
Cich5g00097 ACH 1014 1294 Core DNA Replication Machinery family AT1G08840 29.392 5.60e-18 88.2
Cich5g00165 . 2 972 Core DNA Replication Machinery family AT1G77320 45.545 0.0 795.0
Cich5g00364 . 1 601 Core DNA Replication Machinery family AT5G08020 68.576 0.0 892.0
Cich5g00591 . 12 81 Core DNA Replication Machinery family AT2G37560 58.571 1.02e-20 94.0
Cich5g00592 . 12 363 Core DNA Replication Machinery family AT2G37560 57.022 1.65e-147 417.0
Cich5g00596 . 12 80 Core DNA Replication Machinery family AT2G37560 50.0 4.38e-19 81.6
Cich5g00598 . 12 363 Core DNA Replication Machinery family AT2G37560 64.773 2.85e-178 497.0
Cich5g01222 . 323 369 Core DNA Replication Machinery family AT1G07270 68.085 1.73e-13 67.8
Cich5g01321 . 33 241 Core DNA Replication Machinery family AT1G77470 26.222 3.51e-09 57.0
Cich5g02022 . 1182 1287 Core DNA Replication Machinery family AT1G08840 33.043 5.71e-13 66.6
Cich5g02160 . 67 790 Core DNA Replication Machinery family AT1G08130 67.579 0.0 1011.0
Cich5g02850 . 1 275 Core DNA Replication Machinery family AT2G24490 41.489 1.08e-71 224.0
Cich5g03125 . 1 252 Core DNA Replication Machinery family AT2G24490 40.927 1.96e-62 197.0
Cich5g03189 . 215 294 Core DNA Replication Machinery family AT4G19130 51.25 5.47e-19 82.4
Cich5g03289 . 1614 1680 Core DNA Replication Machinery family AT1G08260 57.746 1.60e-22 89.4
Cich5g04137 . 430 651 Core DNA Replication Machinery family AT5G63960 73.874 6.75e-103 327.0
Cich5g04424 . 245 341 Core DNA Replication Machinery family AT4G14700 30.303 5.92e-09 53.5
Cich4g00277 . 68 164 Core DNA Replication Machinery family AT2G24490 30.435 1.66e-08 50.8
Cich4g00370 . 12 562 Core DNA Replication Machinery family AT2G31270 39.59 3.94e-98 306.0
Cich4g00446 . 432 560 Core DNA Replication Machinery family AT2G31270 41.667 3.17e-21 93.2
Cich4g00546 . 127 170 Core DNA Replication Machinery family AT2G25100 72.727 1.98e-13 68.2
Cich4g00772 . 26 500 Core DNA Replication Machinery family AT1G07270 57.637 0.0 555.0
Cich4g00877 . 44 176 Core DNA Replication Machinery family AT1G79150 38.462 3.87e-12 63.5
Cich4g01083 . 384 653 Core DNA Replication Machinery family AT5G63960 55.926 5.54e-84 269.0
Cich4g01798 . 879 1294 Core DNA Replication Machinery family AT1G08840 27.731 9.86e-38 152.0
Cich4g02310 . 413 560 Core DNA Replication Machinery family AT1G44900 75.676 1.29e-63 225.0
Cich4g02898 . 887 1269 Core DNA Replication Machinery family AT1G08840 27.187 7.77e-31 129.0
Cich4g02935 . 11 286 Core DNA Replication Machinery family AT1G21690 25.667 6.53e-14 72.8
Cich4g03333 . 308 1083 Core DNA Replication Machinery family AT5G63960 28.504 4.73e-88 311.0
Cich4g03354 . 1 78 Core DNA Replication Machinery family AT1G79150 46.914 6.15e-16 73.9
Cich4g03652 . 934 1269 Core DNA Replication Machinery family AT1G08840 27.225 2.53e-23 104.0
Cich4g04259 ACH 245 341 Core DNA Replication Machinery family AT4G14700 32.323 4.17e-10 57.0
Cich4g04864 . 1 801 Core DNA Replication Machinery family AT1G79150 57.283 0.0 881.0
Cich3g00620 . 826 1288 Core DNA Replication Machinery family AT1G08840 29.865 1.14e-46 176.0
Cich3g00736 . 182 932 Core DNA Replication Machinery family AT5G22010 69.393 0.0 1027.0
Cich3g01292 . 323 414 Core DNA Replication Machinery family AT1G07270 54.348 3.95e-26 98.6
Cich3g01294 . 1 1294 Core DNA Replication Machinery family AT1G08840 55.645 0.0 1410.0
Cich3g01428 . 9 287 Core DNA Replication Machinery family AT1G21690 23.49 6.07e-14 72.8
Cich3g01647 . 424 593 Core DNA Replication Machinery family AT5G08020 26.136 2.17e-07 49.3
Cich3g01868 . 1635 1695 Core DNA Replication Machinery family AT1G08260 65.574 1.05e-23 92.0
Cich3g02271 . 17 396 Core DNA Replication Machinery family AT2G20980 46.5 7.64e-106 315.0
Cich3g03106 . 594 678 Core DNA Replication Machinery family AT5G67100 62.353 3.21e-30 110.0
Cich3g03313 . 1014 1289 Core DNA Replication Machinery family AT1G08840 29.139 1.59e-21 100.0
Cich3g04139 . 1 339 Core DNA Replication Machinery family AT1G21690 80.826 0.0 575.0
Cich3g04353 . 334 539 Core DNA Replication Machinery family AT5G08020 26.214 7.56e-10 57.4
Cich3g04550 . 2 349 Core DNA Replication Machinery family AT5G27740 38.244 2.75e-81 261.0
Cich3g04712 . 41 776 Core DNA Replication Machinery family AT1G08130 35.776 3.76e-168 520.0
Cich3g05031 . 1138 1267 Core DNA Replication Machinery family AT1G08840 28.671 4.06e-08 53.5
Cich2g00081 . 171 218 Core DNA Replication Machinery family AT1G21690 37.5 7.22e-06 40.4
Cich2g00173 . 1 801 Core DNA Replication Machinery family AT1G79150 57.319 0.0 878.0
Cich2g00731 . 1021 1269 Core DNA Replication Machinery family AT1G08840 32.075 4.87e-18 89.0
Cich2g00734 . 1021 1269 Core DNA Replication Machinery family AT1G08840 32.075 2.35e-17 87.8
Cich2g00737 . 1041 1269 Core DNA Replication Machinery family AT1G08840 31.818 2.13e-18 89.4
Cich2g00746 . 1018 1268 Core DNA Replication Machinery family AT1G08840 30.682 1.34e-17 83.6
Cich2g00748 . 1020 1267 Core DNA Replication Machinery family AT1G08840 30.798 2.69e-17 85.9
Cich2g00750 . 1018 1256 Core DNA Replication Machinery family AT1G08840 30.709 7.08e-16 81.6
Cich2g00792 . 1610 1773 Core DNA Replication Machinery family AT1G08260 42.073 8.15e-35 126.0
Cich2g00826 . 1018 1268 Core DNA Replication Machinery family AT1G08840 31.439 6.93e-20 91.7
Cich2g00994 . 231 357 Core DNA Replication Machinery family AT2G07690 70.079 2.62e-54 186.0
Cich2g02158 . 1 446 Core DNA Replication Machinery family AT1G67320 67.991 0.0 662.0
Cich2g02332 . 101 166 Core DNA Replication Machinery family AT2G42120 66.667 1.58e-24 92.8
Cich2g02450 . 1 79 Core DNA Replication Machinery family AT1G79150 47.561 1.86e-18 76.3
Cich2g02537 . 1 220 Core DNA Replication Machinery family AT5G49010 56.195 4.41e-86 252.0
Cich2g03619 . 233 357 Core DNA Replication Machinery family AT2G07690 68.8 5.58e-53 178.0
Cich2g04064 . 1 727 Core DNA Replication Machinery family AT2G07690 78.474 0.0 1172.0
Cich2g04271 . 1 278 Core DNA Replication Machinery family AT3G02920 50.0 1.99e-93 275.0
Cich2g04306 . 64 352 Core DNA Replication Machinery family AT2G42120 48.097 1.33e-83 254.0
Cich2g04330 . 406 778 Core DNA Replication Machinery family AT1G08130 28.186 4.37e-29 123.0
Cich2g04472 . 1 106 Core DNA Replication Machinery family AT4G18590 62.264 3.12e-48 150.0
Cich2g04926 . 1 596 Core DNA Replication Machinery family AT3G25100 72.333 0.0 854.0
Cich2g05278 . 1096 1322 Core DNA Replication Machinery family AT4G02110 71.93 5.53e-115 385.0
Cich1g00137 . 83 260 Core DNA Replication Machinery family AT5G26680 27.222 5.49e-07 48.9
Cich1g00506 . 1 439 Core DNA Replication Machinery family AT2G42120 77.221 0.0 717.0
Cich1g01855 . 336 574 Core DNA Replication Machinery family AT5G22010 22.867 1.28e-09 60.8
Cich1g01978 . 1 201 Core DNA Replication Machinery family AT1G80190 60.199 8.25e-88 255.0
Cich1g02325 . 1 636 Core DNA Replication Machinery family AT2G06510 66.094 0.0 872.0
Cich1g02422 . 182 283 Core DNA Replication Machinery family AT1G08260 71.569 1.00e-45 158.0
Cich1g03026 . 1018 1269 Core DNA Replication Machinery family AT1G08840 32.21 1.08e-19 93.6
Cich1g03133 . 1 831 Core DNA Replication Machinery family AT5G44635 72.857 0.0 1258.0
Cich1g03300 . 888 1283 Core DNA Replication Machinery family AT1G08840 30.562 5.18e-38 153.0
Cich1g04049 . 9 764 Core DNA Replication Machinery family AT3G09660 65.262 0.0 1001.0
Cich1g04933 . 1 451 Core DNA Replication Machinery family AT5G41880 66.083 0.0 645.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Cich BAH 1.1e-23 No_clan TR PHD