AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cich4g04260 ATGGAAGAAACACCGGCAACCAACATCGGCGGAGACGCTCACCAGGAAATGATCGCAGCATTCTCAGAGATAACTTCTGCTTCCAAAGAAGAAGCCTTCTTCTTCCTCGAATCGCACAACTTCGATCTCGATTCCGCCGTCTCCACCTTCTTCGAGACCGCTGCTGCCGCAGAAGAGGCTCCCGTGTCGGCTTTACCTGTTCGAAACCCTAACCGTTCTTCTGACACTCATTCCCCTTCATTTTCTCCATCGTCTTCTCCGTCTCGCTCCCGATCAGCTTCCCCACCGGCTTCTCTTGGTTTACAACAACCGGACGGTGGCAATCCTTACAATCTACGATCTAGGAATACCGCTGCGGATAAGAAGCCATCAGGTAGTCGCTCCACTGGACGCATACGGACTTTCTCAGATCTGAATCGACCGGGCGATGACTCGGGAAGTGACTCGGATGAGCCCCAGGAGTATTACACCGGTGGCGAAAAGAGTGGAATGCTTGTTCAAGATCCAACAAAGGCAAATGATGTGGAATCACTGTTCAATCAAGCTCGACAAGCAGGAGCAGAAGAAGGAACTCTTGAACAACTCCGACCATCTTCAAGCTCCAGAAGCTTTTCTGGAAGAGGAAGATTACTATCTGGAGAGACAACATCAGCTACTCCTCAACAGTCTGAACCCGATGTTCACACACACACCATCACTTTCTGGACCAACGGTTTCACCGTAAACGATGGCCCTTTGAGAAGACTCGATGATCCTCAAAATGCATCCTTCATAGAGAGCATAAGACAGTCGGCGTGTCCAGAAGAGCTCAAGCCGGCAAAAGGAAGAGCTCCGGTCCATGTCAACCTTGTGAGGAAGCTGGAAGACTACCCTGTCCAGAAACACCGCCACACCGCCTTTGTGGGGGTGGGTAGAACCCTAGGCAGCACCACCACGTCATCAGAAGACACCACCGCCGCCCTACCACCTGCCACCGCCGCCCCAACCCCTTTGGCGGGCCTAGTCGTGGACGACTCGTTACCATCTACTTCTATTCAACTGAGATTGGGTGATGGGACCCGTATGGTTTCGCGGTTCAATTTCCACCACACGATTGGTGATATTCGTTCTTTTATTGATGCATCAAGGCCCGGCGGGTCTAGGGTTTATCAGCTTCTGACAATGGGGTTTCCACCGAAGCAACTTAATGATTTGAATCAGACGATTGAAGCGGCTGGGCTAGCGAATTCGGTTGTGATTCAGAAACTCTAG 1251 51.48 MEETPATNIGGDAHQEMIAAFSEITSASKEEAFFFLESHNFDLDSAVSTFFETAAAAEEAPVSALPVRNPNRSSDTHSPSFSPSSSPSRSRSASPPASLGLQQPDGGNPYNLRSRNTAADKKPSGSRSTGRIRTFSDLNRPGDDSGSDSDEPQEYYTGGEKSGMLVQDPTKANDVESLFNQARQAGAEEGTLEQLRPSSSSRSFSGRGRLLSGETTSATPQQSEPDVHTHTITFWTNGFTVNDGPLRRLDDPQNASFIESIRQSACPEELKPAKGRAPVHVNLVRKLEDYPVQKHRHTAFVGVGRTLGSTTTSSEDTTAALPPATAAPTPLAGLVVDDSLPSTSIQLRLGDGTRMVSRFNFHHTIGDIRSFIDASRPGGSRVYQLLTMGFPPKQLNDLNQTIEAAGLANSVVIQKL 416
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cich4g04260 416 SMART faf-3 223 317 IPR012989 -
Cich4g04260 416 MobiDBLite consensus disorder prediction 193 227 - -
Cich4g04260 416 Pfam UBX domain 342 415 IPR001012 GO:0005515(InterPro)
Cich4g04260 416 MobiDBLite consensus disorder prediction 67 135 - -
Cich4g04260 416 MobiDBLite consensus disorder prediction 57 166 - -
Cich4g04260 416 PANTHER UBX DOMAIN CONTAINING PROTEIN 13 415 - GO:0000045(PANTHER)|GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0007030(PANTHER)|GO:0031468(PANTHER)|GO:0043130(PANTHER)|GO:0043161(PANTHER)|GO:0061025(PANTHER)
Cich4g04260 416 CDD UBX-UBXN2 344 415 - -
Cich4g04260 416 ProSiteProfiles SEP domain profile. 227 291 IPR012989 -
Cich4g04260 416 SUPERFAMILY NSFL1 (p97 ATPase) cofactor p47, SEP domain 222 312 IPR036241 -
Cich4g04260 416 Gene3D - 292 416 - -
Cich4g04260 416 MobiDBLite consensus disorder prediction 186 227 - -
Cich4g04260 416 Pfam SEP domain 232 305 IPR012989 -
Cich4g04260 416 SUPERFAMILY UBA-like 13 52 IPR009060 GO:0005515(InterPro)
Cich4g04260 416 FunFam Plant UBX domain-containing protein 4 227 289 - -
Cich4g04260 416 FunFam Plant UBX domain-containing protein 4 292 416 - -
Cich4g04260 416 Pfam UBA-like domain 15 55 - -
Cich4g04260 416 Gene3D - 12 54 - -
Cich4g04260 416 ProSiteProfiles UBX domain profile. 338 415 IPR001012 GO:0005515(InterPro)
Cich4g04260 416 Gene3D SEP domain 227 289 IPR036241 -
Cich4g04260 416 SMART ubx-3 337 416 IPR001012 GO:0005515(InterPro)
Cich4g04260 416 SUPERFAMILY Ubiquitin-like 300 414 IPR029071 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cich4g04260 K14012 UBX domain-containing protein 1
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cich Cich-Chr4:124708642 Cich7g03414 Cich-Chr7:107899373 dispersed