AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cich4g04295 ATGTCGTTGGCCGTCGAAGCTGTTTCGAGTTCCACTAACATGGGACTTGAAGATAATAAAGAAGGAGACAAGAGTGGAGTCGAAGACAATGGAGACGAATCCTCCATTTACGAGACTGAAGATGAAGGAGAAGATACAGAAAGTAATAAAATCGATTTGGGTCCTCAATACACCCTCAAAGAACAATTCGAGAAAGACAAGGATGACGAGAGCCTGAGAAAATGGAAAGAACAACTACTTGGAAATGTCGACATTAATGCTGTTGGAGAATCACTAGAGCCAGAAGTGAAGATCGTCAGCCTTTCGATACTATCTCCAGGAAGATCTGACATTGTTCTTGCGATACCTGAAGATGGAAAACCGAAAGGGCCATGGTTTACACTGAAAGAAGGCTGTCGTTACAGTCTTCGATTCTCATTTCAAGTTAGTCGTAACATTGTTTCTGGTTTAAAGTACACCAACAACGTATGGAAAACTGGCGTGAAGGTTGATGGTGTGAAACAGATGCTTGGTACTTTTAGTCCCCAACAAGAAGTATACACTTATGACATGCCAGAAGAGACCACCCCTTCTGGTTATTTTGCAAGAGGTTCTTATTCTGCTAAAACTAAGTTTGTTGATGATGACGGCAAATGTTACTTGGAGATCAACTATACGTTTGATATTCGGAAAGAGTGGGCGAGTGTTGAAGCACCTAAAACACTATAA 708 41.24 MSLAVEAVSSSTNMGLEDNKEGDKSGVEDNGDESSIYETEDEGEDTESNKIDLGPQYTLKEQFEKDKDDESLRKWKEQLLGNVDINAVGESLEPEVKIVSLSILSPGRSDIVLAIPEDGKPKGPWFTLKEGCRYSLRFSFQVSRNIVSGLKYTNNVWKTGVKVDGVKQMLGTFSPQQEVYTYDMPEETTPSGYFARGSYSAKTKFVDDDGKCYLEINYTFDIRKEWASVEAPKTL 235
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cich4g04295 235 Gene3D Coagulation Factor XIII, subunit A, domain 1 48 228 IPR024792 -
Cich4g04295 235 MobiDBLite consensus disorder prediction 33 47 - -
Cich4g04295 235 Pfam RHO protein GDP dissociation inhibitor 39 225 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
Cich4g04295 235 MobiDBLite consensus disorder prediction 17 31 - -
Cich4g04295 235 MobiDBLite consensus disorder prediction 1 16 - -
Cich4g04295 235 PRINTS RHO protein GDP dissociation inhibitor signature 163 178 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
Cich4g04295 235 PRINTS RHO protein GDP dissociation inhibitor signature 205 222 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
Cich4g04295 235 PRINTS RHO protein GDP dissociation inhibitor signature 146 162 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
Cich4g04295 235 PANTHER RHO GDP-DISSOCIATION INHIBITOR 32 226 IPR000406 GO:0005094(InterPro)|GO:0005094(PANTHER)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0005829(PANTHER)|GO:0007266(PANTHER)|GO:0007266(InterPro)|GO:0016020(PANTHER)
Cich4g04295 235 FunFam Rho GDP-dissociation inhibitor 1 49 228 - -
Cich4g04295 235 SUPERFAMILY E set domains 33 226 IPR014756 -
Cich4g04295 235 MobiDBLite consensus disorder prediction 1 56 - -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cich4g04295 K12462 Rho GDP-dissociation inhibitor
leaf

Event-related genes

Select Gene_1 Gene_2 Event_name
63014 Cich4g04295 Cich7g00393
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cich Cich-Chr2:107309025 Cich4g04295 Cich-Chr4:125726056 dispersed
Cich Cich-Chr2:156059625 Cich4g04295 Cich-Chr4:125726056 dispersed
Cich Cich-Chr3:36119731 Cich4g04295 Cich-Chr4:125726056 dispersed
Cich Cich-Chr4:125726056 Cich7g00393 Cich-Chr7:11770921 dispersed