Gene detail

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Species

Gene ID

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Or, Query Sequence

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Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cich4g04317	ATGGCATTTGAATCTACCCATGAGTTTCCTTTTAGGCATGATGATGAAGTATTACAGGAGATACAGCAGCCTGTTCGATTTGGTTATAATCTTAAGATGGACTTCTCGGAATCTACAAAAATCGTATACGATAGGATCCAAAAAATAGAGCCCGATAACGTCTCCAAGATTGTCGGGTATCTCCTTCTTCAAGATCATGGTGAAAGAGAAATGATAAGACTAGCATACTGCCCCGATAATTTAATACACTCTTTGATCAATAAGGCAAAAACCCATCTCAAATTACCTTCAAGTATCCCGGAAATGCCCCTACACTTCACGCCATTTACACCTTCAACTCGTCATTCACCATTGACTATCCAAATCCCAAGTCAACCCGTTGACTATGTTCCCATGGTTTATCCTTCTTCATTTCCTGAAGATTATCGTCTTCACAACCACCTTCATTTCCTTTCATTGGAAGACCAGATTGACTCGGTCAACAGCCCGGATTTTTCAACTAACAAATTTTACAACTCATCAGAACCTTCATTAGGTCCTAGAGCCAATAGGAGGTCGCCAAGTCTACCCGAATTTCCATTCAAAGTTTGCCATTACTTCATTAAAGGATTTTGTAGACATGGAAACAACTGTCGCTACTTACATCCTACATCTGAAAGCTTCTCTTATATCGAGGACGATCACGTCTTTTCACCTGGGTCCCTTGAGAAACTAGAGTTGGAACTCACTGAGCTTTTGAAATCAAGAAGAGGGTATCCTCTTTCAATAGCTTCTTTACCGATGTTATATTATGAGAAATTCGGCAAGTCACTTCAAGCCGAGGGGTATTTGACCGAAAGTCAAAGACATGGGAAAGCTGGTTATAGTTTGACTAAGCTTCTTGCACGGCTTAAAAGCATTTGTCTCATTGACAGGCCACATGGGCAACATGCTGTCATTTTGGCTGATGACCTGGCAAAATGTATGGATCATAATATTGGAGATAGAGATAGAAATGAACATGGTGGTATTGTAGCGGGGTCTAGACAGATATATTTGACTTTTCCAGCTGAGAGTACCTTTTCGGAACGTGACGTTTTCAACTATTTTAACAAATTTGGGCCGGTCCATGACGTGAGGATTCCATGTCAGCAAAAGAGAATGTTTGGATTCGTGACTTTTGTATATTCGGAAACGGTTCGCCATATTTTAAACAAGGGAAACCCGCATTTTGTAAGCGGCGCACGTGTTTTGGTCAAACCCTACCGGGAGAAATCTAAGGCGGATGATAGTTTTTACCATGAAATGAATCTGATCAGGAAACATGGAGAGACATTCCAGCATATGTACCAAGGTGGTCACTGTCTTGAAACTGAAATTGGGCTGCAGTCAATGCCAAGAATTTCTGATAATTCAAGGTTAATCAAGAAGCAACTCATCGATGAACAAAGAGAACAAGCCCTTGAATTTGAAAGAAGGCATTTTTCAGAGATGCAATCAGCTGCAGATTTCAATAACCAATTACCAAGTTTTAGAACCTCATTCGAAGAGTTGAGGCTATCAGAAGGCAATGCTCATGCACAACAGATTGATTTTCGTTCAACCGAGCGTTTTAATTATCTTCTAGATTACATCAACAATGGTCCCTCTAATGATGAAAGAGTTAGGCAGATCAATACCAAGTACAAGGAGGAGAGTAGTCAGGGGCTGAATCTTCCTGACAGCCCGTTTGCACCTGCATTAGGAGGTGAAATATCAACAGTTATATAG	1749	40.65	MAFESTHEFPFRHDDEVLQEIQQPVRFGYNLKMDFSESTKIVYDRIQKIEPDNVSKIVGYLLLQDHGEREMIRLAYCPDNLIHSLINKAKTHLKLPSSIPEMPLHFTPFTPSTRHSPLTIQIPSQPVDYVPMVYPSSFPEDYRLHNHLHFLSLEDQIDSVNSPDFSTNKFYNSSEPSLGPRANRRSPSLPEFPFKVCHYFIKGFCRHGNNCRYLHPTSESFSYIEDDHVFSPGSLEKLELELTELLKSRRGYPLSIASLPMLYYEKFGKSLQAEGYLTESQRHGKAGYSLTKLLARLKSICLIDRPHGQHAVILADDLAKCMDHNIGDRDRNEHGGIVAGSRQIYLTFPAESTFSERDVFNYFNKFGPVHDVRIPCQQKRMFGFVTFVYSETVRHILNKGNPHFVSGARVLVKPYREKSKADDSFYHEMNLIRKHGETFQHMYQGGHCLETEIGLQSMPRISDNSRLIKKQLIDEQREQALEFERRHFSEMQSAADFNNQLPSFRTSFEELRLSEGNAHAQQIDFRSTERFNYLLDYINNGPSNDERVRQINTKYKEESSQGLNLPDSPFAPALGGEISTVI	582

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cich4g04317	582	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	342	417	IPR000504	GO:0003723(InterPro)
	Cich4g04317	582	ProSiteProfiles	OST-type HTH domain profile.	234	317	IPR025605	-
	Cich4g04317	582	CDD	RRM-AtC3H46-like	344	413	IPR034365	-
	Cich4g04317	582	Gene3D	-	348	423	IPR012677	-
	Cich4g04317	582	ProSiteProfiles	Zinc finger C3H1-type profile.	191	218	IPR000571	GO:0046872(InterPro)
	Cich4g04317	582	FunFam	zinc finger CCCH domain-containing protein 53-like isoform X2	349	420	-	-
	Cich4g04317	582	Pfam	RNA recognition motif	354	404	IPR000504	GO:0003723(InterPro)
	Cich4g04317	582	SMART	c3hfinal6	193	217	IPR000571	GO:0046872(InterPro)
	Cich4g04317	582	Gene3D	-	192	268	-	-
	Cich4g04317	582	SUPERFAMILY	RNA-binding domain, RBD	354	422	IPR035979	GO:0003676(InterPro)
	Cich4g04317	582	SUPERFAMILY	CCCH zinc finger	194	216	IPR036855	GO:0046872(InterPro)
	Cich4g04317	582	PANTHER	RNA-BINDING (RRM-RBD-RNP MOTIFS)	33	571	-	-
	Cich4g04317	582	SMART	rrm1-1	343	413	IPR000504	GO:0003723(InterPro)

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cich4g04317	-	-

Duplication type information

Select	Gene1	Location1	Gene2	Location2	Duplicated-type
	Cich	Cich-Chr4:126247472	Cich5g03250	Cich-Chr5:72748660	dispersed
	Cich	Cich-Chr4:126247472	Cich5g02736	Cich-Chr5:58515508	transposed