Gene detail

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Gene ID

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Or, Query Sequence

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Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cich4g04359	ATGGCGGATTCGGATAACGAATCAGGAGGACACAACGCTGGAGGCGAGTTATCGGCGAGGGAGCAGGATAGGTTCTTGCCGATTGCTAACGTGAGCCGGATCATGAAGAAGGCGTTACCGGCAAACGCGAAGATCTCTAAGGATGCGAAGGAGACAGTGCAGGAGTGCGTATCGGAGTTCATCAGTTTCATCACCGGGGAAGCTTCCGACAAGTGCCAAAGGGAGAAGAGGAAGACAATCAACGGCGACGATTTGCTGTGGGCGATGACGACGCTAGGGTTTGAAGAGTACGTGGAGCCTCTGAAGGTGTATTTAGCAAAGTACAGGGAGATAGAAGGGGAGAAGACCACGATGGGAAGACAAGGCGAGAAGGACGGGTCATCTGGAGGCGGTGGTGCTGCCGCAGGCGGCGGAGGGAGTGGTGGCGGTGTTAATTCAGGCGGGTATAATGACGGCGGTGGAGGGATGTACGGAGGGATGCAGAACAACATGATGATGGGTGGTCGGCACCACCACCAGATGTATAATTCGGGTTCATATCATCATCAAATGGGTATGGGGGTAGGGAGTCCGAAGGGCAGTTTGGGCAGATCGGGCAGCTTCGGTGGTGGCAGTGGTGGAGCTTCCACTGTGAAACCTAGGTAG	645	55.04	MADSDNESGGHNAGGELSAREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLAKYREIEGEKTTMGRQGEKDGSSGGGGAAAGGGGSGGGVNSGGYNDGGGGMYGGMQNNMMMGGRHHHQMYNSGSYHHQMGMGVGSPKGSLGRSGSFGGGSGGASTVKPR	214

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cich4g04359	214	Gene3D	Histone, subunit A	15	132	IPR009072	GO:0046982(InterPro)
	Cich4g04359	214	MobiDBLite	consensus disorder prediction	1	21	-	-
	Cich4g04359	214	FunFam	Nuclear transcription factor Y subunit B-3	14	135	-	-
	Cich4g04359	214	PANTHER	CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED	12	182	IPR027113	GO:0000978(PANTHER)\|GO:0000981(PANTHER)\|GO:0001228(InterPro)\|GO:0006355(InterPro)\|GO:0006357(PANTHER)\|GO:0016602(PANTHER)\|GO:0016602(InterPro)
	Cich4g04359	214	MobiDBLite	consensus disorder prediction	116	142	-	-
	Cich4g04359	214	SUPERFAMILY	Histone-fold	22	130	IPR009072	GO:0046982(InterPro)
	Cich4g04359	214	PRINTS	CCAAT-binding transcription factor subunit A signature	53	71	-	-
	Cich4g04359	214	PRINTS	CCAAT-binding transcription factor subunit A signature	72	90	-	-
	Cich4g04359	214	PRINTS	CCAAT-binding transcription factor subunit A signature	91	109	-	-
	Cich4g04359	214	ProSitePatterns	NF-YB-HAP3 subunit signature.	56	72	IPR003956	GO:0005634(InterPro)\|GO:0006355(InterPro)\|GO:0043565(InterPro)
	Cich4g04359	214	MobiDBLite	consensus disorder prediction	176	214	-	-
	Cich4g04359	214	Pfam	Histone-like transcription factor (CBF-NF-Y) and archaeal histone	25	89	IPR003958	-

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cich4g04359	K08065	nuclear transcription Y subunit beta

Event-related genes

Select	Gene_1	Gene_2	Event_name
	60598	Cich1g01730	Cich4g04359

Duplication type information

Select	Gene1	Location1	Gene2	Location2	Duplicated-type
	Cich	Cich-Chr1:34481918	Cich4g04359	Cich-Chr4:127462282	dispersed
	Cich	Cich-Chr3:36731300	Cich4g04359	Cich-Chr4:127462282	dispersed
	Cich	Cich-Chr4:127462282	Cich6g01072	Cich-Chr6:15430463	dispersed
	Cich	Cich-Chr4:127462282	Cich6g00865	Cich-Chr6:12185802	transposed

Gene Family Members

Select	Gene	Event_type	S_start	S_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cich7g00037	ACH	1	118	CCAAT-HAP3 Transcription Factor family	AT1G09030	63.866	6.00e-54	165.0
	Cich6g00865	ACH	8	156	CCAAT-HAP3 Transcription Factor family	AT2G37060	75.333	1.44e-71	224.0
	Cich6g01072	ACH	1	169	CCAAT-HAP3 Transcription Factor family	AT2G37060	74.269	7.23e-81	235.0
	Cich6g02967	.	67	109	CCAAT-HAP3 Transcription Factor family	AT2G38880	83.721	9.40e-23	87.4
	Cich6g03041	.	35	215	CCAAT-HAP3 Transcription Factor family	AT2G13570	56.831	3.51e-59	182.0
	Cich5g01850	ACH	1	173	CCAAT-HAP3 Transcription Factor family	AT2G37060	55.702	8.33e-67	206.0
	Cich5g02507	.	20	215	CCAAT-HAP3 Transcription Factor family	AT2G13570	57.561	2.04e-59	183.0
	Cich4g00125	.	10	157	CCAAT-HAP3 Transcription Factor family	AT2G47810	62.162	1.13e-59	182.0
	Cich4g02284	ACH	8	143	CCAAT-HAP3 Transcription Factor family	AT2G37060	76.087	8.75e-73	215.0
	Cich4g04359	ACH	1	126	CCAAT-HAP3 Transcription Factor family	AT4G14540	89.683	6.26e-81	237.0
	Cich3g01069	.	64	109	CCAAT-HAP3 Transcription Factor family	AT2G38880	80.435	5.39e-24	87.8
	Cich3g01924	.	1	201	CCAAT-HAP3 Transcription Factor family	AT5G47670	59.709	1.65e-72	218.0
	Cich1g01098	ACH	48	147	CCAAT-HAP3 Transcription Factor family	AT2G47810	69.0	2.21e-48	151.0
	Cich1g01730	ACH	1	126	CCAAT-HAP3 Transcription Factor family	AT4G14540	88.889	1.15e-78	233.0
	Cich1g04048	ACH	1	132	CCAAT-HAP3 Transcription Factor family	AT2G37060	62.406	1.08e-51	162.0
	Cich1g05196	.	51	157	CCAAT-HAP3 Transcription Factor family	AT2G47810	70.27	3.66e-55	168.0

Transcription factors information

Select	Gene	Hmm_acc	Hmm_name	Score	E-value	Regulatory Factors	Family
	Cich	CBFD_NFYB_HMF	2.2e-27	CL0012		TF	NF-YB