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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cich4g04389 ATGGGGGAAGAAGATGGGCCAGGGCTATTCCATCACAAGAAACAAACACTAATCGATGAAATCACCGGTAAGATCATCAACGGTGATCTCCTCACCAAGATTCAGGCCGCAAGGGAGATTCGGAGCATGATTCGGAATAGAAATTCCTCCGACAAGATTCGTACTAAGCTCGCTGCTGCCGGCGTCATTCAGCCACTTGTCCTCATGCTCTACTCCAGAAATCACGATGCTCGCGAAGTTTCCTTACTTGCACTTCTCAATCTCGCCTCTAGAAACGAACGAAACAAAGAACAAATAGTGACCTGTGGTGCAATCCCTCCTCTTGTGGACCTTCTCAAGTTTCAAAACACCAACACCTTACGCGAACTAGCAACTGCTGCAATTCTAACACTATCAACCGCCCCACCAAACAAAAAGACCTTAATAGACTCAGGAGTAATACCACTACTCATTCAAATCCTCAGTTGTGGAACCGTTCAAGGCCGAGTCGACTCAGTCACCGCCCTCCACAACCTCCTAACCTCACAACAACCACCTCTAATCCCTGATTCCAAAGCCATCCCCCCTCTCATCAACCTCCTAAAAGAATGCAAAAAATCCTCCAAATTCGCTGAAAAAACCACATCTTTAATCCAAATCATCTCACAATCCGAAGAAGGAAAATCCGCGATCACAAATACACAAGACGGGATTTTAACATTAGTGGAAACAATCGAAGACGGATCTTTAATTAGCACAGAACACGCGGTTACCACTTTGCTTACATTGTGTGTAAGCTCTAGAAGTAAATACAGAGAGCTTATATTGAATGAAGGCGCGATTCCTGGTTTGTTGAGGTTAACTGTTTATGGAAGTGAAGATGCACAAGAAAAAGCAAGAACACTTTTGGATTTGCTTAGAGAGTCTTCTAATGAAAAGAGATTGAGTTCTTCTGTTCTTGAGAAGATTGTTCATGATATTGCTGCGAGAGTTGATGGATCCGATAAAACCGTGGAAACCGCTAAAAGTTTACTTCAAGATATGGTTCAAAGAAGTATGGAAGTTAAAATGAGTGAGATACAAATAAGGGCTTCGTCTTCTTCTTCGTCAAGTTAA 1095 42.83 MGEEDGPGLFHHKKQTLIDEITGKIINGDLLTKIQAAREIRSMIRNRNSSDKIRTKLAAAGVIQPLVLMLYSRNHDAREVSLLALLNLASRNERNKEQIVTCGAIPPLVDLLKFQNTNTLRELATAAILTLSTAPPNKKTLIDSGVIPLLIQILSCGTVQGRVDSVTALHNLLTSQQPPLIPDSKAIPPLINLLKECKKSSKFAEKTTSLIQIISQSEEGKSAITNTQDGILTLVETIEDGSLISTEHAVTTLLTLCVSSRSKYRELILNEGAIPGLLRLTVYGSEDAQEKARTLLDLLRESSNEKRLSSSVLEKIVHDIAARVDGSDKTVETAKSLLQDMVQRSMEVKMSEIQIRASSSSSSS 364
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cich4g04389 364 Coils Coil 285 305 - -
Cich4g04389 364 PANTHER U BOX DOMAIN-CONTAINING 17 303 - -
Cich4g04389 364 ProSiteProfiles Armadillo-plakoglobin ARM repeat profile. 61 103 IPR000225 GO:0005515(InterPro)
Cich4g04389 364 Pfam Armadillo-beta-catenin-like repeat 92 126 IPR000225 GO:0005515(InterPro)
Cich4g04389 364 Pfam Armadillo-beta-catenin-like repeat 135 173 IPR000225 GO:0005515(InterPro)
Cich4g04389 364 Gene3D - 142 314 IPR011989 -
Cich4g04389 364 SMART arm-5 217 258 IPR000225 GO:0005515(InterPro)
Cich4g04389 364 SMART arm-5 175 216 IPR000225 GO:0005515(InterPro)
Cich4g04389 364 SMART arm-5 134 174 IPR000225 GO:0005515(InterPro)
Cich4g04389 364 SMART arm-5 261 301 IPR000225 GO:0005515(InterPro)
Cich4g04389 364 SMART arm-5 91 133 IPR000225 GO:0005515(InterPro)
Cich4g04389 364 SMART arm-5 50 90 IPR000225 GO:0005515(InterPro)
Cich4g04389 364 ProSiteProfiles Armadillo-plakoglobin ARM repeat profile. 185 229 IPR000225 GO:0005515(InterPro)
Cich4g04389 364 SUPERFAMILY ARM repeat 18 341 IPR016024 -
Cich4g04389 364 ProSiteProfiles Armadillo-plakoglobin ARM repeat profile. 103 146 IPR000225 GO:0005515(InterPro)
Cich4g04389 364 Gene3D - 26 141 IPR011989 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cich4g04389 K08332 vacuolar protein 8
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cich9g00283 . 67 667 U-box gene family AT1G60190 40.984 5.46e-151 450.0
Cich9g00507 . 9 107 U-box gene family AT3G07370 32.0 4.83e-08 52.4
Cich9g00560 . 495 827 U-box gene family AT2G23140 47.305 2.32e-84 272.0
Cich9g00839 . 279 422 U-box gene family AT2G33340 29.252 1.40e-09 58.9
Cich9g00962 ACH 2 409 U-box gene family AT5G09800 45.301 1.36e-108 325.0
Cich9g01662 . 308 428 U-box gene family AT2G33340 26.829 2.13e-08 55.1
Cich9g01665 . 364 439 U-box gene family AT3G54850 45.455 5.40e-11 59.7
Cich9g01867 . 237 485 U-box gene family AT2G33340 25.373 3.43e-07 53.1
Cich9g02524 ACH 366 621 U-box gene family AT3G46510 24.138 5.50e-09 56.6
Cich9g02692 . 236 470 U-box gene family AT2G33340 30.8 2.34e-19 90.9
Cich9g02698 . 236 423 U-box gene family AT2G33340 31.579 1.81e-18 85.5
Cich9g02699 ACH 236 481 U-box gene family AT2G33340 28.897 4.83e-18 83.2
Cich9g03014 . 60 133 U-box gene family AT4G25160 35.135 4.25e-08 48.5
Cich8g00084 . 640 710 U-box gene family AT3G54790 47.222 1.23e-13 63.9
Cich8g00217 . 620 812 U-box gene family AT2G23140 24.39 2.83e-08 52.0
Cich8g00313 . 353 491 U-box gene family AT5G67530 48.252 4.46e-36 133.0
Cich8g00708 . 346 492 U-box gene family AT5G67530 28.75 2.91e-11 60.8
Cich8g00797 . 1 359 U-box gene family AT1G71020 38.42 2.98e-58 196.0
Cich8g00798 ACH 1 604 U-box gene family AT1G23030 53.698 0.0 601.0
Cich8g01262 . 43 88 U-box gene family AT2G45910 50.0 2.76e-08 53.1
Cich8g01280 . 1 595 U-box gene family AT5G67530 75.544 0.0 900.0
Cich8g01579 . 262 507 U-box gene family AT2G33340 22.761 1.14e-08 55.5
Cich8g02588 . 26 766 U-box gene family AT1G76390 26.948 1.67e-39 156.0
Cich8g02640 . 393 535 U-box gene family AT5G65500 46.528 1.45e-36 130.0
Cich8g02669 . 516 742 U-box gene family AT2G23140 32.773 2.52e-20 95.1
Cich8g02898 ACH 523 823 U-box gene family AT2G23140 25.797 4.05e-15 77.4
Cich8g02969 . 34 205 U-box gene family AT2G45910 45.349 2.53e-45 157.0
Cich8g02970 . 223 345 U-box gene family AT1G01660 41.935 2.14e-14 68.9
Cich8g02971 . 647 830 U-box gene family AT2G45910 63.587 7.47e-78 246.0
Cich8g02972 . 1 832 U-box gene family AT2G45910 48.127 0.0 803.0
Cich7g00029 . 100 349 U-box gene family AT1G24330 35.317 5.70e-42 150.0
Cich7g00374 ACH 546 754 U-box gene family AT2G23140 25.926 2.63e-10 61.6
Cich7g00469 . 441 555 U-box gene family AT1G23030 63.71 1.26e-43 149.0
Cich7g01197 . 271 501 U-box gene family AT5G67530 42.616 6.66e-46 169.0
Cich7g01807 ACH 242 309 U-box gene family AT1G71020 53.623 1.66e-17 86.3
Cich7g02196 . 334 607 U-box gene family AT1G23030 33.803 6.59e-34 129.0
Cich7g02367 ACH 1 728 U-box gene family AT1G29340 63.563 0.0 853.0
Cich7g02633 . 6 369 U-box gene family AT4G21350 60.656 2.91e-143 410.0
Cich7g03448 ACH 446 823 U-box gene family AT2G23140 43.959 3.92e-81 266.0
Cich7g03497 . 6 402 U-box gene family AT2G35930 33.495 1.84e-69 224.0
Cich7g03615 ACH 490 754 U-box gene family AT3G54790 30.0 3.93e-18 85.9
Cich6g00243 . 9 94 U-box gene family AT3G07370 29.07 1.76e-06 47.4
Cich6g00376 . 787 845 U-box gene family AT5G61550 66.102 1.53e-24 92.8
Cich6g00378 . 22 835 U-box gene family AT4G25160 51.411 0.0 815.0
Cich6g00534 . 7 635 U-box gene family AT3G46510 39.163 1.97e-129 395.0
Cich6g00968 ACH 11 626 U-box gene family AT3G54850 63.961 0.0 764.0
Cich6g01453 . 285 505 U-box gene family AT5G42340 27.948 2.40e-17 85.1
Cich6g01475 . 363 477 U-box gene family AT5G67530 38.281 6.06e-14 66.6
Cich6g01820 . 566 654 U-box gene family AT5G67340 45.161 1.67e-15 70.9
Cich6g02161 ACH 4 829 U-box gene family AT2G23140 54.589 0.0 813.0
Cich6g02221 ACH 1 448 U-box gene family AT3G49810 71.492 0.0 627.0
Cich6g02516 . 424 518 U-box gene family AT5G65500 42.268 8.62e-17 81.3
Cich6g02524 . 19 786 U-box gene family AT5G65500 44.066 0.0 624.0
Cich6g02558 . 1 435 U-box gene family AT5G37490 45.578 4.19e-126 370.0
Cich6g02581 ACH 440 696 U-box gene family AT5G67340 26.129 3.78e-11 66.6
Cich6g02825 ACH 4 410 U-box gene family AT2G35930 55.164 2.65e-165 473.0
Cich6g02826 ACH 8 410 U-box gene family AT2G35930 55.448 3.18e-163 463.0
Cich6g03191 . 7 402 U-box gene family AT2G35930 41.769 2.18e-105 316.0
Cich6g04089 . 279 427 U-box gene family AT2G33340 27.329 2.86e-06 47.0
Cich6g04169 . 53 660 U-box gene family AT5G42340 53.758 0.0 648.0
Cich5g00952 ACH 230 561 U-box gene family AT1G71020 25.995 4.38e-15 76.3
Cich5g01414 . 357 492 U-box gene family AT5G67530 39.865 9.96e-20 92.0
Cich5g01488 ACH 366 621 U-box gene family AT3G46510 24.138 1.78e-08 54.7
Cich5g01578 . 214 401 U-box gene family AT1G49780 30.457 5.52e-13 67.4
Cich5g01988 ACH 6 410 U-box gene family AT2G35930 55.083 8.17e-162 462.0
Cich5g01989 ACH 9 410 U-box gene family AT2G35930 54.762 9.24e-162 459.0
Cich5g02550 . 344 639 U-box gene family AT3G46510 61.824 2.80e-117 362.0
Cich5g02551 . 344 639 U-box gene family AT3G46510 62.162 4.69e-123 365.0
Cich5g02552 . 372 628 U-box gene family AT3G46510 61.479 6.13e-103 311.0
Cich5g02818 . 344 631 U-box gene family AT3G46510 53.401 6.61e-93 287.0
Cich5g02821 . 460 616 U-box gene family AT3G46510 39.49 6.01e-28 105.0
Cich5g02891 . 352 629 U-box gene family AT3G46510 50.179 5.37e-82 258.0
Cich5g02940 . 449 582 U-box gene family AT3G46510 62.687 1.77e-49 166.0
Cich5g02943 . 342 628 U-box gene family AT3G46510 43.62 6.76e-71 232.0
Cich5g02944 . 354 624 U-box gene family AT3G46510 44.086 7.31e-60 199.0
Cich5g02977 . 471 630 U-box gene family AT2G28830 44.785 1.46e-36 134.0
Cich5g02989 . 356 536 U-box gene family AT2G28830 47.312 1.02e-42 150.0
Cich5g03079 . 370 612 U-box gene family AT3G46510 50.617 4.48e-71 233.0
Cich5g03086 . 352 629 U-box gene family AT3G46510 49.821 1.67e-81 256.0
Cich5g03123 . 71 133 U-box gene family AT4G25160 34.921 3.92e-07 45.8
Cich5g03377 . 503 613 U-box gene family AT5G15400 63.964 2.37e-41 150.0
Cich5g03378 . 642 792 U-box gene family AT5G15400 80.132 5.43e-81 256.0
Cich5g03503 . 361 405 U-box gene family AT2G33340 57.778 3.17e-08 47.0
Cich5g04072 . 353 495 U-box gene family AT5G67530 43.137 6.47e-28 107.0
Cich5g04295 ACH 527 782 U-box gene family AT2G23140 26.493 2.60e-11 64.7
Cich4g00122 . 59 285 U-box gene family AT1G29340 55.263 1.01e-70 228.0
Cich4g00247 . 416 634 U-box gene family AT5G67340 29.386 6.99e-15 76.6
Cich4g00302 . 357 493 U-box gene family AT5G67530 48.322 1.35e-33 134.0
Cich4g00401 . 33 655 U-box gene family AT5G67340 40.909 6.33e-133 407.0
Cich4g00562 ACH 1 460 U-box gene family AT3G07360 57.469 0.0 528.0
Cich4g00563 ACH 6 275 U-box gene family AT3G07370 62.963 8.96e-128 362.0
Cich4g00570 . 419 486 U-box gene family AT5G67340 35.616 1.04e-07 47.8
Cich4g00748 . 353 475 U-box gene family AT5G67530 44.776 8.61e-27 105.0
Cich4g00911 ACH 2 635 U-box gene family AT3G46510 67.347 0.0 851.0
Cich4g01457 ACH 7 414 U-box gene family AT3G18710 43.855 1.36e-109 327.0
Cich4g01613 . 242 467 U-box gene family AT1G23030 32.245 2.88e-17 85.5
Cich4g01844 . 27 807 U-box gene family AT1G76390 27.778 4.30e-60 217.0
Cich4g02053 . 379 425 U-box gene family AT3G52450 63.83 3.54e-15 69.7
Cich4g02391 . 11 624 U-box gene family AT3G54850 63.902 0.0 775.0
Cich4g02502 . 95 203 U-box gene family AT3G07360 48.624 7.30e-27 101.0
Cich4g02589 ACH 11 624 U-box gene family AT3G54850 64.065 0.0 775.0
Cich4g02702 . 1 444 U-box gene family AT5G65920 62.838 0.0 560.0
Cich4g03989 ACH 1 421 U-box gene family AT1G49780 65.796 0.0 538.0
Cich4g04066 . 352 494 U-box gene family AT5G67530 43.226 2.96e-32 125.0
Cich4g04130 . 209 514 U-box gene family AT2G33340 24.85 1.74e-14 72.8
Cich4g04389 . 489 748 U-box gene family AT3G54790 37.037 7.87e-32 125.0
Cich4g04524 . 512 693 U-box gene family AT5G15400 46.774 2.63e-41 144.0
Cich4g04553 ACH 2 90 U-box gene family AT3G07370 41.237 1.00e-08 55.5
Cich4g04640 . 243 459 U-box gene family AT2G33340 25.63 9.16e-07 50.8
Cich4g04875 . 346 633 U-box gene family AT3G46510 63.542 1.39e-116 360.0
Cich4g04919 ACH 312 424 U-box gene family AT2G33340 27.586 3.93e-07 50.8
Cich3g00804 . 121 797 U-box gene family AT1G20780 26.401 5.11e-43 166.0
Cich3g00887 . 25 797 U-box gene family AT1G20780 27.604 2.11e-59 217.0
Cich3g01203 . 237 514 U-box gene family AT2G33340 30.877 1.64e-34 135.0
Cich3g01426 ACH 1 726 U-box gene family AT1G29340 60.109 0.0 816.0
Cich3g01469 . 438 717 U-box gene family AT1G67530 30.634 2.27e-22 98.2
Cich3g01695 ACH 527 811 U-box gene family AT2G23140 25.676 5.52e-14 73.2
Cich3g01904 ACH 474 823 U-box gene family AT2G23140 45.028 9.35e-77 255.0
Cich3g01988 . 237 517 U-box gene family AT2G33340 21.595 1.73e-07 51.6
Cich3g02295 ACH 353 477 U-box gene family AT5G67530 50.0 2.40e-31 116.0
Cich3g02342 . 33 541 U-box gene family AT5G65200 51.55 3.74e-163 473.0
Cich3g02525 . 237 434 U-box gene family AT2G33340 25.333 1.75e-11 64.3
Cich3g02629 ACH 344 561 U-box gene family AT1G71020 26.818 2.31e-13 70.9
Cich3g02897 ACH 734 800 U-box gene family AT2G28830 43.434 1.87e-14 75.1
Cich3g03532 . 219 451 U-box gene family AT2G33340 22.407 4.92e-12 67.8
Cich3g03719 . 381 706 U-box gene family AT4G36550 31.024 9.56e-33 131.0
Cich3g03863 . 558 773 U-box gene family AT2G45910 30.942 1.49e-21 89.4
Cich3g04069 . 495 825 U-box gene family AT2G23140 46.988 5.69e-82 264.0
Cich3g04189 . 398 587 U-box gene family AT3G46510 28.632 3.51e-10 63.5
Cich3g04288 ACH 559 711 U-box gene family AT2G23140 36.129 1.02e-10 65.5
Cich3g04426 ACH 633 755 U-box gene family AT2G23140 27.778 7.90e-06 47.4
Cich3g04478 . 353 459 U-box gene family AT5G67530 37.288 4.82e-12 62.8
Cich3g04816 ACH 18 448 U-box gene family AT3G49810 66.295 0.0 575.0
Cich3g04856 ACH 5 706 U-box gene family AT5G67340 50.068 0.0 669.0
Cich3g04934 . 352 491 U-box gene family AT5G67530 45.395 1.08e-33 129.0
Cich3g05103 . 2 1030 U-box gene family AT5G15400 73.572 0.0 1570.0
Cich3g05235 . 59 538 U-box gene family AT5G40140 52.546 8.83e-163 470.0
Cich3g05359 . 475 706 U-box gene family AT1G24330 34.855 1.02e-23 100.0
Cich2g00623 . 70 154 U-box gene family AT4G36550 44.706 8.51e-17 72.0
Cich2g00811 . 20 459 U-box gene family AT3G11840 40.991 1.21e-101 308.0
Cich2g00817 . 28 435 U-box gene family AT5G37490 43.602 5.79e-107 322.0
Cich2g00875 . 242 1030 U-box gene family AT1G68940 48.679 0.0 766.0
Cich2g01116 ACH 26 612 U-box gene family AT1G23030 59.547 0.0 686.0
Cich2g01368 . 9 686 U-box gene family AT1G60190 42.939 0.0 545.0
Cich2g01501 . 393 577 U-box gene family AT2G28830 27.128 2.70e-06 47.8
Cich2g01502 . 393 577 U-box gene family AT2G28830 27.128 2.88e-06 48.1
Cich2g02974 . 353 477 U-box gene family AT5G67530 48.529 2.08e-30 114.0
Cich2g02992 ACH 353 494 U-box gene family AT5G67530 40.523 6.53e-26 103.0
Cich2g03093 . 53 660 U-box gene family AT5G42340 57.351 0.0 679.0
Cich2g03712 . 214 467 U-box gene family AT2G33340 22.008 2.05e-06 49.7
Cich2g04065 . 266 507 U-box gene family AT2G33340 24.715 1.71e-09 58.2
Cich2g04094 . 393 577 U-box gene family AT2G28830 25.397 6.41e-07 50.1
Cich2g04463 ACH 237 463 U-box gene family AT2G33340 26.054 1.98e-13 69.3
Cich2g04673 . 260 459 U-box gene family AT2G33340 26.728 2.49e-08 55.5
Cich1g00215 ACH 236 507 U-box gene family AT2G33340 25.704 2.20e-14 74.7
Cich1g00255 ACH 1 460 U-box gene family AT3G07360 56.025 4.25e-178 505.0
Cich1g00256 ACH 1 276 U-box gene family AT3G07370 65.108 3.69e-131 370.0
Cich1g00419 ACH 280 415 U-box gene family AT3G46510 47.101 8.14e-31 117.0
Cich1g00420 . 444 642 U-box gene family AT3G46510 46.231 1.05e-51 175.0
Cich1g00467 ACH 237 464 U-box gene family AT2G33340 26.236 1.98e-12 66.2
Cich1g00716 . 57 235 U-box gene family AT3G18710 31.319 2.37e-18 79.0
Cich1g00764 . 244 359 U-box gene family AT2G35930 31.624 6.27e-11 57.8
Cich1g00951 . 1 672 U-box gene family AT5G01830 54.252 0.0 714.0
Cich1g01128 . 393 576 U-box gene family AT2G28830 25.0 3.45e-06 48.1
Cich1g01387 . 681 739 U-box gene family AT3G54790 44.118 2.44e-06 47.4
Cich1g01556 . 561 657 U-box gene family AT2G23140 36.082 1.65e-11 60.1
Cich1g01633 ACH 1 421 U-box gene family AT1G49780 64.846 0.0 536.0
Cich1g01783 ACH 603 805 U-box gene family AT2G23140 24.757 5.05e-12 67.0
Cich1g01862 ACH 11 101 U-box gene family AT3G07370 32.967 1.07e-06 48.9
Cich1g02201 ACH 734 805 U-box gene family AT2G28830 45.192 1.39e-16 81.3
Cich1g02491 ACH 238 348 U-box gene family AT1G23030 40.8 7.55e-19 89.7
Cich1g02626 . 339 496 U-box gene family AT5G67530 27.95 2.43e-16 74.7
Cich1g03024 . 600 655 U-box gene family AT5G67340 52.632 8.72e-10 56.2
Cich1g03537 ACH 337 422 U-box gene family AT2G33340 35.955 1.22e-08 55.1
Cich1g03921 ACH 8 410 U-box gene family AT2G35930 54.739 3.14e-161 458.0
Cich1g03986 . 602 792 U-box gene family AT5G15400 64.921 4.89e-71 240.0
Cich1g04136 . 357 433 U-box gene family AT3G54850 64.935 8.33e-24 92.0
Cich1g04339 ACH 236 470 U-box gene family AT2G33340 30.0 2.60e-18 87.4
Cich1g04476 ACH 366 621 U-box gene family AT3G46510 24.138 1.27e-08 55.8
Cich1g04811 . 654 744 U-box gene family AT3G54790 32.258 5.17e-07 45.8