AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cich4g04443 ATGAGAGAAGAAGGTTTTAGCTCATCGGGGGACCCATTCCTTTCCCCAAATTCTCCTCCTCTTCCTCCGCCTCCTCCTACCGCTGCTGCAAGTTCGGCTGGGGCATCATCACCAGCTGTTCCCACCAATGCTGGCAGTACAGACTGGTTAGGTCATGGTCATGGATCCAAAGCAGGTTCTTTATCTCGAATTAGTTCACAGCCCACATGGATTTCATTAAGCACAAGTGCTCATGGTTCAGCTCTTGGCTCCTCTCAACCTTCATGTAGACCATGGGAAAGGGGCGATCTTCTAAAAAGACTGTCCACATTCAGACCTGCAAATTGGTTTGGAAAACCTAAGGCTGCTAGTTCACTTGCCTGTGCTGGAAGAGGCTGGATGAATGTGGATGTTGATAAGATTCAATGTGAGTCTTGTAGTGCAAACTTAAAATATAATGCACCAGATTCCTTTTCTACCCCTCATGGTGAAGATTTTGGCAATCAACTCGATGAAGGACACAAAGTTACGTGTCCTTGGAGAGGAAATAGTTGTGCTGAAAGTTTAGTCCAATTCCCTCCTACCCCTCCATCAGCTTTAATAGGAGGTTACAAAGACCGCTGTGATGGACTTCTTCAATTTCCAATTTTACCCCTAGTGGCTCCTTCAGCACTTGACCAGATGAAGGTTTCAAGAGGTCCAGAAATCGATCGGTTTCTGGCTCAATCTGATATGGAAAACACCAAAGACGTGTTATGCATATATTCACGTGCGCAAAATTTGATAAGTCTTTGTGGATGGGAGCCGAGGTGGCTTCCAAATGTTCAAGATTGTGAAGAAAATTCTGCTCAATCAGCAAGAAACGGTGGTTCTTTTAGTCCTATTAAAGATCATAAAAAAGATTCTTTAAAGAACGAAAGTAGATCGCCTTTATTGGATTGCAGCTTATGTGGGGCCACAGTAAGAATCTTGGACTTCATTCATGTCAACCGTCCTTCCCGTTTTGCCCCTACCAACATCGATGTCCCTGAAACAAGTAAAAAGATTGTAATCACACGTGGAATAAGTGCAGCAAGTGGAATCAGTGGGTGGATTGAAGAACATACAGAAGACATCGATGAAGCTGCAACTACAGGACAAAAAAGACCCTTATCCGACTTATACCAAGATCCAAATCTCGGGCAGGCGGCGGGCAGCGAGGTCGGAAATCGGGCAGCATCGTTTGAATCCCGAGGTCCAAACGAAGGTGGGAGTACTGTCGATAGGCCACATGGGATCATAGATAGTGTTGAAGGTGTTGTCATTGACCGTGATGGTGATGAAGTCAACGATAGCAAAATGTCTTATAAATTTGCACGTGTGTCTTACAGAAGAGACTCATCTGGTGCGGGTCCCAGCCGGGTTTCGTATTTTGAAAATGACAGAACTGCCCCTGTTACAAAAGATTCCGCTAGAGCTTCTTCTGTTATTGCTATGGATACGTATTGTCATAGTGACGATAATGATTCCATGGAAAGTGTCGAGAATCATCCCGGATATGGAGACGAGGTTAATTACCTTCAGGGACAAAATAGCACGAACGATGAGGAGGTTTTGAATGTTGTGGGAAAAGACGGTTTTACCCTTGCGGTTAGTGGAGGGAGTGTGGGAATGGGAGCGAGTCATGAAGCGGAGATACATGGGTCGGACGGTTTGATTCGTAGGACGGGAAGTGTTGTTGGTGACATGGAAGGGGGTACGGGTGTGAGTGTGACTGAGAACCAAGGGCAAACCGGTAATTTTGTCCCGGGAGTGACCGAGAGTCAGACGGATAGTGATGTGAATCTTTTACCCCATGAGCAAAGTTCTCACCCTTCTCTTTCTTGTAATGCGGTTGTATGTTCGGGTTTTGAAGCATCGAGAGATGAAGTGATGCAAGCGGGAAAGTCTTCTCCTAATGATGAATGTGGATTCCCAAATTACCCTCCTGCAAATGGGCTAGGGCCTCCAAATGGGGAAAGCAACTTTGAAGAACCAGTGGAGTTTGATCCAATCAAACATCATAATCTTTACTGCCCTTGGGTTAATGGAAATGTTGCTGCAGCTGGTGTGGGTGTGGGACCCACTTCAAGTGGTAGTGGTTTAGCTCTTTGTGGGTGGCAGTTGACTTTAGATGCTTTAGATGGATTTCAAGGGTCTGAACCCAATCAGACCGTTGAGTCTGAATCAGCTGCTTCTCTTTACAAGGATGATCATGATCATCAAGTTTCTGGTCGAAAACTCATGGCACGACATTCGTTCAATAAAAGCCATGGCTAA 2277 45.45 MREEGFSSSGDPFLSPNSPPLPPPPPTAAASSAGASSPAVPTNAGSTDWLGHGHGSKAGSLSRISSQPTWISLSTSAHGSALGSSQPSCRPWERGDLLKRLSTFRPANWFGKPKAASSLACAGRGWMNVDVDKIQCESCSANLKYNAPDSFSTPHGEDFGNQLDEGHKVTCPWRGNSCAESLVQFPPTPPSALIGGYKDRCDGLLQFPILPLVAPSALDQMKVSRGPEIDRFLAQSDMENTKDVLCIYSRAQNLISLCGWEPRWLPNVQDCEENSAQSARNGGSFSPIKDHKKDSLKNESRSPLLDCSLCGATVRILDFIHVNRPSRFAPTNIDVPETSKKIVITRGISAASGISGWIEEHTEDIDEAATTGQKRPLSDLYQDPNLGQAAGSEVGNRAASFESRGPNEGGSTVDRPHGIIDSVEGVVIDRDGDEVNDSKMSYKFARVSYRRDSSGAGPSRVSYFENDRTAPVTKDSARASSVIAMDTYCHSDDNDSMESVENHPGYGDEVNYLQGQNSTNDEEVLNVVGKDGFTLAVSGGSVGMGASHEAEIHGSDGLIRRTGSVVGDMEGGTGVSVTENQGQTGNFVPGVTESQTDSDVNLLPHEQSSHPSLSCNAVVCSGFEASRDEVMQAGKSSPNDECGFPNYPPANGLGPPNGESNFEEPVEFDPIKHHNLYCPWVNGNVAAAGVGVGPTSSGSGLALCGWQLTLDALDGFQGSEPNQTVESESAASLYKDDHDHQVSGRKLMARHSFNKSHG 758
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cich4g04443 758 MobiDBLite consensus disorder prediction 275 299 - -
Cich4g04443 758 MobiDBLite consensus disorder prediction 369 417 - -
Cich4g04443 758 MobiDBLite consensus disorder prediction 15 29 - -
Cich4g04443 758 Pfam C3HC zinc finger-like 91 207 IPR012935 GO:0008270(InterPro)
Cich4g04443 758 PANTHER NUCLEAR-INTERACTING PARTNER OF ALK 1 758 - GO:0005634(PANTHER)
Cich4g04443 758 MobiDBLite consensus disorder prediction 492 514 - -
Cich4g04443 758 MobiDBLite consensus disorder prediction 30 44 - -
Cich4g04443 758 MobiDBLite consensus disorder prediction 1 62 - -
Cich4g04443 758 MobiDBLite consensus disorder prediction 633 663 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cich4g04443 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
63020 Cich4g04443 Cich7g00457
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cich Cich-Chr3:69144080 Cich4g04443 Cich-Chr4:129925616 dispersed
Cich Cich-Chr4:129925616 Cich5g02751 Cich-Chr5:59190666 dispersed
Cich Cich-Chr4:129925616 Cich7g00457 Cich-Chr7:14644647 wgd