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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cich4g04462 ATGCGAGTACATGTCGATTGTCCCGGATGTGAGAACAAGATCCGAAAAGCTCTTCAAAGACTCAAAGGTGTGGAGAACGTAGATATAGACATGGGTTTACAGAAGGTGACTGTAACCGGATACGCTGACGAGAAGAAGGTGTTGAAAACCGTAAGAAAGACTGGCCGTCGAGCTGAGATCTGGAACGTACCTTACAACCCTGATATCCGCAGCCATAACTACAACGTTAATCAATATGCTCAACAACAACCACAAAACGCTGATTCTGGCCCAGGCCCCTCGGCGACGTTCTACACCAGGCAGCCATCATCGGCGTCCTCCTACAACTACTATAAGCACGGTTATGATAACCACCAGGGTTATAACCCAGTCCAGTCCTCTGGTTTAATTGGCCACCAGACTGGGGCTGCCTTTAGCGATGAAAATACTCAGGCTGCCTGTAACATCATGTAG 453 48.34 MRVHVDCPGCENKIRKALQRLKGVENVDIDMGLQKVTVTGYADEKKVLKTVRKTGRRAEIWNVPYNPDIRSHNYNVNQYAQQQPQNADSGPGPSATFYTRQPSSASSYNYYKHGYDNHQGYNPVQSSGLIGHQTGAAFSDENTQAACNIM 150
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cich4g04462 150 Pfam Heavy-metal-associated domain 3 56 IPR006121 GO:0046872(InterPro)
Cich4g04462 150 SUPERFAMILY HMA, heavy metal-associated domain 3 62 IPR036163 GO:0046872(InterPro)
Cich4g04462 150 ProSiteProfiles Heavy-metal-associated domain profile. 1 59 IPR006121 GO:0046872(InterPro)
Cich4g04462 150 Gene3D - 1 60 - -
Cich4g04462 150 PANTHER COPPER TRANSPORT PROTEIN ATOX1-RELATED 1 150 IPR045181 GO:0046872(InterPro)
Cich4g04462 150 CDD HMA 1 59 IPR006121 GO:0046872(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cich4g04462 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cich Cich-Chr3:27208758 Cich4g04462 Cich-Chr4:130440572 dispersed
Cich Cich-Chr3:27221447 Cich4g04462 Cich-Chr4:130440572 dispersed
Cich Cich-Chr4:130440572 Cich7g02836 Cich-Chr7:97136595 dispersed
Cich Cich-Chr4:130440572 Cich3g04400 Cich-Chr3:117808815 transposed