AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cich4g04497 ATGTGTTGGAAGAGAATAACGGATTTGAATTCGGTTCAAATCGAACCATTCGGGTCTATATTCGGGTTTCAAAATACCGACAACGTCATAACGCTGCTGCTAAACGTACTCATCTTTCTCTCCATTGAAGACGGAGACTCGAAGCTCTTCCTCTACTCCCCTCAGGCCCCAGTTTCTGAGAAAGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGATGTCTGGGAGGAATCGTGGACCTCCACTTCCAATGAAAGGCCCCCCTCACGGTGGGCTTCCACCCATTCACGAGCCTCCATATGGAAGGAATCTAGGTCCAATGCCCCATCCTGCATTGCTTGAAGAAATGAGAGAAGCTCAATTCGGTATGGGTCCCAGACAACTCCCTCCTCACCCTGCTATCATTGAAGAACGTTTTGCAGCTCAACATCAAGACATTCAAGGGCTTTTGGTTGACAATCAACGGTTAGCTGCCACACATGTTGCACTTAAGCAAGAATTAGAAGCTGCACAACATGAACTTCAACAAACGGATCGATTTGCTCGCAACTTTCTCATGGAAAAAGACATACAAATGAGGGAGTTGTATGAAAAGTCAGCCAAAATGGAACACGACCTTCATGGAGTGGAAGCCATGCGTGCTGAACTTATGCAATTACATGCTGATATTAAAGAGTTGACCGCCACACGTCAAAAACTTACTGGTCAAGTTCAGGGTATGACCCAAGATCTTGCTAGAGCTAATGCAGACTTACAACAAGTCCCAGCTTTAAAGTCAGAAATTGATGGACTTAGACAAGAATTACAACATGCAAGGGCTGCAATTGAACATGAAAAGAAAGGGCATGCAGAAAACTATGAACATGGTCAAGTAATGGAAAAGAATTTACTCTCAATGGCTCGTGAGCTTGAAAAGTTGCGTGCTGAGATGGCAAATGCTGAAAAAAGGGCACGTGCTGTTGCAGCTGTAGCTGTAGGGAATCAAAACCCAGTTTACAATACAAATTATGGGAATGCTGAAGCTAACTATTCAGGAAATCCATACCCTCAAAGTTATGGGATTAGTTCCATGAATCCTGTGCAGCCAGGTGCAGAAGGGTATCCACAGTATGGAGGTGGACCTGCATCTTGGGGATCATATGATATGCAACGGGCTCAAGGACACAGATAG 1170 44.87 MCWKRITDLNSVQIEPFGSIFGFQNTDNVITLLLNVLIFLSIEDGDSKLFLYSPQAPVSEKVCVCVREREREMSGRNRGPPLPMKGPPHGGLPPIHEPPYGRNLGPMPHPALLEEMREAQFGMGPRQLPPHPAIIEERFAAQHQDIQGLLVDNQRLAATHVALKQELEAAQHELQQTDRFARNFLMEKDIQMRELYEKSAKMEHDLHGVEAMRAELMQLHADIKELTATRQKLTGQVQGMTQDLARANADLQQVPALKSEIDGLRQELQHARAAIEHEKKGHAENYEHGQVMEKNLLSMARELEKLRAEMANAEKRARAVAAVAVGNQNPVYNTNYGNAEANYSGNPYPQSYGISSMNPVQPGAEGYPQYGGGPASWGSYDMQRAQGHR 389
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cich4g04497 389 Coils Coil 209 250 - -
Cich4g04497 389 PANTHER PROTEIN FLX-LIKE 2 73 366 IPR040353 -
Cich4g04497 389 Coils Coil 254 281 - -
Cich4g04497 389 Coils Coil 289 323 - -
Cich4g04497 389 Coils Coil 153 173 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cich4g04497 K27811 protein FLX/FLXL
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cich Cich-Chr4:11591405 Cich4g04497 Cich-Chr4:131025387 dispersed
Cich Cich-Chr4:131025387 Cich6g02033 Cich-Chr6:28898211 dispersed
Cich Cich-Chr4:131025387 Cich5g01194 Cich-Chr5:20711357 transposed