AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cich4g04513 ATGTTATCGCCACCGCCATTGCCGGAAGTTGTCCTTACAGCGTCTCCTGACGGACCAATCACCGCCTATGATCCGTACTCTGGAACTGTTGTAGGACGCTTCAATGGCAACCGGTGTCCACGAAATGGCATCTGCATTCTCGGAAACGACGTATTCGCCGCTACTCATATTTCGCCGGAGACTGGTGCAGGTTCTGTTCGTATCTATTACTGGTGGTCAACATCATGTACAAAGAGTGTTCCTCTTCCGGAACCTGTAGCTCCACTTGTTGCTTCCGTTGATGGATCGTATATATTTTCCGGCGGAATCTCAGGTCAGATCCATTCGGTAGTGGTAGATTCAGGAGACGTAATCCGGTCGTTTCCTGCTCATGAGAAACCTGTATCTTGCCTCGCGATCAATTATGATGGATCGTTGATTCTCTCAGGAAGTGATGACGGAACGATCGCTGTTATCCCTATATTCCTGCTTCTAGATGCTTCATTTGATGCAGATTCGAGATACTCGAGTTACACCAGGTTCACCGGACATGAATCATCGGTGACGGGATTAACCACCGGCGTCGGAAGGTGCGGTGGGATTATGATCTCTTGTTCCTTGGACTGTACGTGCAAGGTGTGGACCCTCGTGAACGGGATCCATCTACAAACGGTGAGATTCCCCGACGAGGTGTGGTGCATGGTGTTGAATCCGTCGGAGACGGAGTTGTTTGTTGCAGGAATAGAAGGAATGATATATAAAAGAAGGCTTAAAGTAGAGACGAGAAAGCAAGTTGCTGGAGGAAAGACGGTGGTGTGGGCCGAGATGCATGGCGGAGGAGTGGTGGCGATGGAGATGTTGGGCTACGGGAGGATTCTTTTGACGGTATCTGAAAACGGTGAAATTTGTGCATGGCAGGTGGACGGTGGTAAGATGATATCTGGATTTGGTGAGAAGATTGGAGGTGTTAGCGGAGTTGTGGTAAATGGTGGTGGTGGTTTTGCAAAGAGAGAAGTTGGAAGTGAGGAATGCGATGGTTACGGTGGCGGGGAGGAGATGCGTAAGGCGGTGAAGGAGGTGGCGGCAATGGATGATGCTTTGAAAGTGGCGGTGGAAGACCGGAGCCGGGCGATTAGTAATCTTGAGTCGGCAATTGAGATTAACGAAAAGATGCTGAAACTCATGCTGAAGGAAGCCAAGACAATTGCGAAATTTAATGACTCCAATAATAATTAA 1215 48.97 MLSPPPLPEVVLTASPDGPITAYDPYSGTVVGRFNGNRCPRNGICILGNDVFAATHISPETGAGSVRIYYWWSTSCTKSVPLPEPVAPLVASVDGSYIFSGGISGQIHSVVVDSGDVIRSFPAHEKPVSCLAINYDGSLILSGSDDGTIAVIPIFLLLDASFDADSRYSSYTRFTGHESSVTGLTTGVGRCGGIMISCSLDCTCKVWTLVNGIHLQTVRFPDEVWCMVLNPSETELFVAGIEGMIYKRRLKVETRKQVAGGKTVVWAEMHGGGVVAMEMLGYGRILLTVSENGEICAWQVDGGKMISGFGEKIGGVSGVVVNGGGGFAKREVGSEECDGYGGGEEMRKAVKEVAAMDDALKVAVEDRSRAISNLESAIEINEKMLKLMLKEAKTIAKFNDSNNN 404
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cich4g04513 404 SMART WD40-4 211 249 IPR001680 GO:0005515(InterPro)
Cich4g04513 404 SMART WD40-4 167 208 IPR001680 GO:0005515(InterPro)
Cich4g04513 404 SMART WD40-4 114 153 IPR001680 GO:0005515(InterPro)
Cich4g04513 404 SMART WD40-4 260 299 IPR001680 GO:0005515(InterPro)
Cich4g04513 404 PANTHER WD-REPEAT PROTEIN 18 8 321 IPR045227 GO:0005656(PANTHER)|GO:0006261(PANTHER)|GO:0006364(PANTHER)|GO:0097344(PANTHER)
Cich4g04513 404 Gene3D - 164 380 IPR015943 GO:0005515(InterPro)
Cich4g04513 404 ProSiteProfiles Trp-Asp (WD) repeats profile. 121 151 IPR001680 GO:0005515(InterPro)
Cich4g04513 404 Gene3D - 5 163 IPR015943 GO:0005515(InterPro)
Cich4g04513 404 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 10 304 IPR011047 -
Cich4g04513 404 Pfam WD domain, G-beta repeat 116 150 IPR001680 GO:0005515(InterPro)
Cich4g04513 404 Pfam WD domain, G-beta repeat 172 207 IPR001680 GO:0005515(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cich4g04513 K14829 pre-rRNA-processing protein IPI3