AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cich4g04514 ATGAGAAGATGCTCGTTTACTCTAAGCATAAAAGATTTCAAAGTGAATGATTCATTTGTAGCCAGAAAACCAAAAAGTGTTTTCATTCCTCCCTCCTTCTCTGTCTCCATCTCTCTCTGCAATTTATTGTTTTTGCGAGGGAGATTGAAAATGGAGTTGAGGGGAAATAGCGAGTTGCGTTTGTTATTAGTAATTATTAGCATTCTATCGCCATTAATGGAGTTTGGAGCAGCAATTAAAGCCGATGCAGCAACGATCGGATGTGATTTGTTCCAGGGAAATTGGGTATTGGATCAAACATATCCATTCTACAATGAATCCACCTGCCCTTTCCTTGAAAAAGAGTTCAACTGCGTCAACAATGGCCGCCCTGACCGTTTGTATCTCAAATACCGGTGGCAACCCCATGGCTGCCGCTTATCCAGATTTGATGGTCGAAACTTCTTACAAAAACTAAGAGGGAAAACAATAATGTTTGTAGGAGATTCACTCAGTCGAAACCAATGGTTATCACTACTATGCATGATTCACTCATCCGTACCAACTGCAAATTACGCCGTTAATATCTCTATACCTCAAGATATGACCACATATACATTTACGGATTATGGAGTGAAAGTGATATACCATCACAACTTGTACCTAGTGGATATAGTGAAACAAAGAATTGGGAGAGTGTTGAACTTGGATTCACTGACAGCTGGCAAGCTATGGTTGGATGTCGAGTACCTTGTGTTCAACACGTGGCACTGGTGGAACCGCAGAGGAGCCAGCCAACCATTTGATTATATACGAGACGGAGGTCGTGTTTACAAGGACATGGATCGTGTAGTTGCTTTCGGAAAGGCCATTACTACATGGGGTAAATGGATTGATGCCAATATTATTCCGAATAAAACAAAAGTGTTTTTTCAAGGAATATCACCATCTCATTACAACGGCACCGATTGGGGACAACCGAAGGCAAAATCGTGCTCCGGCCAGAAAATTCCTCTTCTGAGCACCACCTATCCCGGAAGCTCGCCGCCGGCGCTGGCGGTCCTCAAGAAATCGCTCAAAACCATCAAGAAACCGGTGACTTTGCTCGACATTACTTACCTTTCTCTCCTGCGGAAAGACGGCCATCCGTCGGCTTATGGGTTAGGGGCGGTGGATTGCAGCCACTGGTGCCTCGCCGGCGTTCCGGACACTTGGACTCTTTTGCTTTACAATCTTATGTTTTAG 1224 44.12 MRRCSFTLSIKDFKVNDSFVARKPKSVFIPPSFSVSISLCNLLFLRGRLKMELRGNSELRLLLVIISILSPLMEFGAAIKADAATIGCDLFQGNWVLDQTYPFYNESTCPFLEKEFNCVNNGRPDRLYLKYRWQPHGCRLSRFDGRNFLQKLRGKTIMFVGDSLSRNQWLSLLCMIHSSVPTANYAVNISIPQDMTTYTFTDYGVKVIYHHNLYLVDIVKQRIGRVLNLDSLTAGKLWLDVEYLVFNTWHWWNRRGASQPFDYIRDGGRVYKDMDRVVAFGKAITTWGKWIDANIIPNKTKVFFQGISPSHYNGTDWGQPKAKSCSGQKIPLLSTTYPGSSPPALAVLKKSLKTIKKPVTLLDITYLSLLRKDGHPSAYGLGAVDCSHWCLAGVPDTWTLLLYNLMF 407
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cich4g04514 407 Pfam PMR5 N terminal Domain 87 138 IPR025846 -
Cich4g04514 407 Pfam GDSL-SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p 140 404 IPR026057 GO:0016740(InterPro)
Cich4g04514 407 PANTHER PROTEIN TRICHOME BIREFRINGENCE-LIKE 9-RELATED 67 405 IPR029962 GO:0005794(PANTHER)|GO:0016413(InterPro)|GO:0016413(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cich4g04514 K23877 xyloglucan O-acetyltransferase
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cich Cich-Chr1:36555798 Cich4g04514 Cich-Chr4:131351356 dispersed
Cich Cich-Chr3:27515006 Cich4g04514 Cich-Chr4:131351356 dispersed
Cich Cich-Chr4:131351356 Cich7g02424 Cich-Chr7:90275575 dispersed
Cich Cich-Chr1:36534385 Cich4g04514 Cich-Chr4:131351356 wgd