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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cich4g04522 ATGGGTTGTTCCGGATCCTCACTAAATAAACAAAACAGAAAGGTGAAAAAGATAAGGAAGCCAAAGCCATGGAAGTTTCCACGGCCGGTGACGTGGAGTCAGCTTGTGCAGATGCGTGATGAGTTTTGGGATACGGCTCCACACCATGGTGGCAAAAAAGAAATCTGGGATGCGATACATGCAGCAGCCGAGGCAGACATAGAGCTTGCCCAAGCAATTGTGGACAGTGCAGGCGTCATTGTTCATAAGCCCGATATGACTGTTTGTTATGATGAGAGAGGTACTAAATATGAAGTACCAAGGTATGTGTTGAGCGAGCCAACAAACTTGATACAACTAAGCTGA 345 46.09 MGCSGSSLNKQNRKVKKIRKPKPWKFPRPVTWSQLVQMRDEFWDTAPHHGGKKEIWDAIHAAAEADIELAQAIVDSAGVIVHKPDMTVCYDERGTKYEVPRYVLSEPTNLIQLS 114
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cich4g04522 114 Gene3D - 31 104 IPR038169 -
Cich4g04522 114 MobiDBLite consensus disorder prediction 1 20 - -
Cich4g04522 114 Pfam Ubiquitin-binding domain 16 112 IPR032752 -
Cich4g04522 114 PANTHER UBIQUITIN DOMAIN CONTAINING 1 PROTEIN-RELATED 1 111 IPR039869 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cich4g04522 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cich Cich-Chr4:131530196 Cich7g02370 Cich-Chr7:88858466 dispersed
Cich Cich-Chr4:131530196 Cich5g03697 Cich-Chr5:95666309 transposed