AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cich4g04559 | ATGAAGGGACATTGCATCAATTCCTTAAAGTTGTTATTGAGCTGCAACATCGAGGATTTACATGATGATTGTTTCGAAGGTTCTATGGACGATAAACACATTTTTAGACAAGTGTTCTTTGGACATGAAGATAGTAGAAGTACTAAAAGGTGTCCTGTAACTGGACCAATCACTTTTCAAAATGACAAAAACTTTCCTAAACATATCTCATTTCATTCAGACAGTGACAATTCAGTCATGACAAGTCAGCAGGATTCTTTACAGTGTAGCACTTCTGAAGAGTTTGCTTCATCAACAAGAAATGTCTCTGATGTTGAAGTTAAACGAAGAAAAGTGTCACCTGAAGAACATTCTGTCACAAAACCTGTTAAATCTTCCAAACCAAGATGGAAAGATTCTTCATTCATTGAACTTGATAAAGATGAACTACTATTTGTCCCCCCTAAAGATTCCACCATAGATCCTAAACCTCTTTTGCGTTATTACACCTATTCTTTACTTAAATCAGCAGGTTGGTTAATTGGGAGACGTAACAGAATCACACACTGTAAAGGACGTGGAGAATATGTCTTCAAATCTCCAGAAGGAAGGCCAATTCGGGAATTTCACAGGGCTTGGAATTTGTGTGGACACAATTTAGTTCAAGATGCAAACTATAAAAGCAAACGTGATGACATAAAGTGGACAAATTTCACTCAATTTCAATCTGATCTTTTGAATGTGTTGACCAAAGTCAAAGAATTGATAAATTCGAGCACAGTTACTGATTTAGCTCATTGTTGGTACTTACTTGATCCCTTTGCAAAAGTGGTGTTCATTGACAAGAGTTTGACTTATCTGAAAGAAGGGAAAGAAGTCAAAGGAAAGAGAAGTGTGGTGAGTGGTTTGTATTCGAAAAAGCAGAAAACAAAAAAGGGTAAAAAAGGGAATTGTCATTTGAAAGATGACGACCTTTTACTCTCGGCTATATTCAGTAACCGATCTATTACTACAAAAAGGAACTCTCCTGTTCCGAAAGTTGTGAAAAAGTACGATAATGCCCTTGGTGTAAGAACAGTTTTGTCTTGGTTGATAAATCTTGGAGTTATTCGTGTCAATGAAGTGATCCAGTACAGGAACCCACAGGATGATACGGTGGTCAAACATGGTTTAGTAACACAAAATGGTATTTTGTGTATGTGTTGTAAGAAAGTGCTTTGTGTGTCTGAATTCAAGAATCATGCGAGTTTGAATCTTTTTAACATGAAAAACACGTGTTTGAATCTTTTTATGGAATCTGGAAAGTCTTTCACTTTATGCCAGCTGGAAGCTTGGTCAACTGAATACAAGGTTAGAAAAAATGCCACGCGGACTGTACAGGTGGCGATTGACCAATACGATGATACTTGTGGACTTTGTGGAGATGGAGGTGAGTTGATATGTTGTGATAATTGCCCTTCCACTTTTCATCAAGGGTGCTTGTCTACACAGGAGCTACCTGAAGGGAATTGGTATTGTTCAACTTGCTGTTGTTGGAGCTGTGGGAATTTAGTCAGTCATATTGAGGCTACAGAATCTAATGCTCTCAAATGTTTGCAATGTGAACATAAATATCATTTGGAATGCGTCAAAGGGAAAGGAATCGAGAGAGATTTGGTGGGCCCCACTTGGTTTTGTGGAGAAACCTGTAAAGAGATACACTCAAGACTTCATTCCCAGATCGGACGTCAGAATCCGATTTCCGATGGTTTCTCATGGACCCTTTTAAGGTGTATTCATGGTGACCAAAAGGTTCATTCCACTCCGGCTTTCATTGCTCTGAAGGCGGAATGCAATCTAAAACTAGCAGTTGCCCTTACAATCATGGAGGAATGCTTTCTTCCTATGGTGGACACAAGAACCGGAATCTATATGATACCCCATGTATTATACAATTGGGGATCGGAATTTGTTCGTCTCAACTATGAGGGATTTTACACGGTGGTCCTTGAAAAAAATGATATTTTACTTTGTGTAGCATCCATAAGGATCCATGGGGGAACGGTAGCAGAGTTGCCTCTAATTGCAACATGCAACAAATATAGACGCCAAGGCATGTGCAGGCGGCTCTTGAATGCTATTGAAGAGATGCTGAAGTCGTTTAAAGTAGAGAAGCTAGTGGTGTCTGCAATTCCTACCTTAGTTGACACGTGGACAGATGGGTTTGGTTTTTTACCGTTGGAAGTTGATGAAAAAACAAGTCTGGAAAAAACTAACCTCATGGCCTTTCCGGGAACCGTATGGCTTAAAAAGCCCATGTACAACAAGGGATTTGAAGGGGTTGTGTAG | 2307 | 39.27 | MKGHCINSLKLLLSCNIEDLHDDCFEGSMDDKHIFRQVFFGHEDSRSTKRCPVTGPITFQNDKNFPKHISFHSDSDNSVMTSQQDSLQCSTSEEFASSTRNVSDVEVKRRKVSPEEHSVTKPVKSSKPRWKDSSFIELDKDELLFVPPKDSTIDPKPLLRYYTYSLLKSAGWLIGRRNRITHCKGRGEYVFKSPEGRPIREFHRAWNLCGHNLVQDANYKSKRDDIKWTNFTQFQSDLLNVLTKVKELINSSTVTDLAHCWYLLDPFAKVVFIDKSLTYLKEGKEVKGKRSVVSGLYSKKQKTKKGKKGNCHLKDDDLLLSAIFSNRSITTKRNSPVPKVVKKYDNALGVRTVLSWLINLGVIRVNEVIQYRNPQDDTVVKHGLVTQNGILCMCCKKVLCVSEFKNHASLNLFNMKNTCLNLFMESGKSFTLCQLEAWSTEYKVRKNATRTVQVAIDQYDDTCGLCGDGGELICCDNCPSTFHQGCLSTQELPEGNWYCSTCCCWSCGNLVSHIEATESNALKCLQCEHKYHLECVKGKGIERDLVGPTWFCGETCKEIHSRLHSQIGRQNPISDGFSWTLLRCIHGDQKVHSTPAFIALKAECNLKLAVALTIMEECFLPMVDTRTGIYMIPHVLYNWGSEFVRLNYEGFYTVVLEKNDILLCVASIRIHGGTVAELPLIATCNKYRRQGMCRRLLNAIEEMLKSFKVEKLVVSAIPTLVDTWTDGFGFLPLEVDEKTSLEKTNLMAFPGTVWLKKPMYNKGFEGVV | 768 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cich4g04559 | 768 | SMART | PHD-3 | 504 | 557 | IPR001965 | - | |
| Cich4g04559 | 768 | SMART | PHD-3 | 462 | 503 | IPR001965 | - | |
| Cich4g04559 | 768 | MobiDBLite | consensus disorder prediction | 106 | 125 | - | - | |
| Cich4g04559 | 768 | Pfam | PHD-finger | 463 | 502 | IPR019787 | - | |
| Cich4g04559 | 768 | CDD | NAT-SF | 654 | 715 | - | - | |
| Cich4g04559 | 768 | Pfam | Tify domain binding domain | 383 | 436 | IPR032308 | - | |
| Cich4g04559 | 768 | ProSiteProfiles | Gcn5-related N-acetyltransferase (GNAT) domain profile. | 610 | 760 | IPR000182 | GO:0016747(InterPro) | |
| Cich4g04559 | 768 | PANTHER | PHD FINGER FAMILY PROTEIN | 345 | 764 | - | - | |
| Cich4g04559 | 768 | SUPERFAMILY | Acyl-CoA N-acyltransferases (Nat) | 645 | 723 | IPR016181 | - | |
| Cich4g04559 | 768 | Gene3D | Zinc-RING finger domain, C3HC4 (zinc finger) | 447 | 522 | IPR013083 | - | |
| Cich4g04559 | 768 | ProSiteProfiles | Zinc finger PHD-type profile. | 460 | 505 | IPR019787 | - | |
| Cich4g04559 | 768 | SUPERFAMILY | FYVE-PHD zinc finger | 448 | 503 | IPR011011 | - | |
| Cich4g04559 | 768 | Gene3D | - | 633 | 740 | - | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cich4g04559 | - | - |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 60650 | Cich1g01866 | Cich4g04559 | |
| 63037 | Cich4g04559 | Cich7g00573 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Cich | Cich-Chr2:157584865 | Cich4g04559 | Cich-Chr4:132246140 | dispersed | |
| Cich | Cich-Chr4:77315362 | Cich4g04559 | Cich-Chr4:132246140 | dispersed | |
| Cich | Cich-Chr4:132246140 | Cich9g01322 | Cich-Chr9:26996631 | dispersed | |
| Cich | Cich-Chr1:36837563 | Cich4g04559 | Cich-Chr4:132246140 | wgd | |
| Cich | Cich-Chr4:132246140 | Cich7g00573 | Cich-Chr7:18495538 | wgd |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Cich9g01322 | . | 519 | 925 | PHD Transcription Factor family | AT1G05380 | 33.81 | 4.23e-66 | 228.0 | |
| Cich9g02443 | . | 26 | 160 | PHD Transcription Factor family | AT5G58610 | 30.435 | 1.58e-09 | 58.9 | |
| Cich8g00566 | ACH | 685 | 760 | PHD Transcription Factor family | AT4G14920 | 37.037 | 2.25e-07 | 53.5 | |
| Cich8g01404 | . | 608 | 666 | PHD Transcription Factor family | AT2G36720 | 31.25 | 7.99e-06 | 42.0 | |
| Cich8g02364 | . | 81 | 661 | PHD Transcription Factor family | AT5G22260 | 31.25 | 1.87e-87 | 285.0 | |
| Cich7g00573 | ACH | 555 | 1025 | PHD Transcription Factor family | AT3G14980 | 46.723 | 2.71e-136 | 431.0 | |
| Cich7g01353 | ACH | 1 | 685 | PHD Transcription Factor family | AT4G30200 | 44.95 | 3.68e-177 | 518.0 | |
| Cich6g00475 | . | 781 | 891 | PHD Transcription Factor family | AT1G05380 | 64.865 | 3.73e-48 | 166.0 | |
| Cich6g01008 | . | 38 | 831 | PHD Transcription Factor family | AT3G53680 | 53.098 | 0.0 | 835.0 | |
| Cich6g02463 | . | 27 | 174 | PHD Transcription Factor family | AT5G58610 | 27.703 | 6.38e-09 | 51.6 | |
| Cich6g03218 | . | 116 | 264 | PHD Transcription Factor family | AT5G57380 | 24.26 | 9.48e-09 | 57.0 | |
| Cich5g01720 | . | 515 | 795 | PHD Transcription Factor family | AT2G36720 | 53.846 | 1.73e-99 | 335.0 | |
| Cich5g01897 | . | 175 | 300 | PHD Transcription Factor family | AT3G53680 | 56.349 | 1.30e-42 | 160.0 | |
| Cich5g02183 | . | 829 | 932 | PHD Transcription Factor family | AT5G58610 | 39.423 | 6.81e-19 | 79.3 | |
| Cich5g03302 | . | 749 | 805 | PHD Transcription Factor family | AT1G05380 | 43.86 | 7.70e-10 | 55.1 | |
| Cich5g03465 | . | 321 | 360 | PHD Transcription Factor family | AT2G36720 | 50.0 | 9.49e-07 | 46.6 | |
| Cich5g04387 | ACH | 130 | 272 | PHD Transcription Factor family | AT5G57380 | 28.481 | 1.30e-08 | 56.2 | |
| Cich4g00260 | ACH | 312 | 940 | PHD Transcription Factor family | AT1G05380 | 45.151 | 4.15e-180 | 556.0 | |
| Cich4g00866 | . | 164 | 301 | PHD Transcription Factor family | AT3G53680 | 52.055 | 4.05e-41 | 153.0 | |
| Cich4g02667 | . | 1 | 504 | PHD Transcription Factor family | AT2G18880 | 35.496 | 9.34e-94 | 294.0 | |
| Cich4g02873 | . | 211 | 983 | PHD Transcription Factor family | AT4G14920 | 45.677 | 0.0 | 655.0 | |
| Cich4g04559 | ACH | 540 | 1024 | PHD Transcription Factor family | AT3G14980 | 55.51 | 5.15e-179 | 543.0 | |
| Cich3g00582 | . | 130 | 264 | PHD Transcription Factor family | AT5G57380 | 25.17 | 2.26e-11 | 65.1 | |
| Cich3g00857 | . | 33 | 215 | PHD Transcription Factor family | AT5G57380 | 25.248 | 8.69e-10 | 60.8 | |
| Cich3g01912 | ACH | 130 | 217 | PHD Transcription Factor family | AT5G57380 | 31.068 | 8.28e-09 | 55.8 | |
| Cich2g00060 | . | 1545 | 1704 | PHD Transcription Factor family | AT5G35210 | 37.5 | 1.26e-23 | 104.0 | |
| Cich2g00143 | . | 320 | 403 | PHD Transcription Factor family | AT5G22260 | 38.202 | 7.14e-06 | 46.6 | |
| Cich2g00786 | . | 196 | 672 | PHD Transcription Factor family | AT5G22260 | 45.902 | 3.95e-143 | 423.0 | |
| Cich2g00787 | . | 15 | 199 | PHD Transcription Factor family | AT5G22260 | 56.15 | 1.10e-62 | 204.0 | |
| Cich2g00823 | . | 17 | 406 | PHD Transcription Factor family | AT5G22260 | 34.279 | 3.22e-69 | 238.0 | |
| Cich2g02523 | . | 27 | 161 | PHD Transcription Factor family | AT5G58610 | 28.889 | 2.25e-09 | 53.1 | |
| Cich2g02898 | ACH | 650 | 719 | PHD Transcription Factor family | AT5G36670 | 44.0 | 6.87e-08 | 55.5 | |
| Cich2g03907 | ACH | 3 | 597 | PHD Transcription Factor family | AT3G24440 | 45.6 | 9.57e-170 | 494.0 | |
| Cich2g04273 | ACH | 2 | 313 | PHD Transcription Factor family | AT4G30200 | 53.968 | 4.39e-97 | 310.0 | |
| Cich2g04591 | ACH | 335 | 459 | PHD Transcription Factor family | AT5G35210 | 26.923 | 1.00e-06 | 49.7 | |
| Cich2g05123 | ACH | 292 | 1085 | PHD Transcription Factor family | AT5G36670 | 38.534 | 5.40e-180 | 555.0 | |
| Cich1g00088 | ACH | 517 | 923 | PHD Transcription Factor family | AT1G05380 | 35.627 | 5.62e-68 | 238.0 | |
| Cich1g00572 | . | 351 | 975 | PHD Transcription Factor family | AT5G58610 | 33.587 | 1.55e-97 | 319.0 | |
| Cich1g00804 | . | 628 | 670 | PHD Transcription Factor family | AT1G05380 | 53.333 | 1.55e-11 | 62.0 | |
| Cich1g01090 | . | 15 | 984 | PHD Transcription Factor family | AT4G14920 | 45.473 | 0.0 | 761.0 | |
| Cich1g01438 | . | 662 | 760 | PHD Transcription Factor family | AT5G36670 | 41.748 | 1.90e-16 | 79.3 | |
| Cich1g01866 | ACH | 539 | 1031 | PHD Transcription Factor family | AT3G14980 | 59.642 | 0.0 | 612.0 | |
| Cich1g02532 | ACH | 46 | 574 | PHD Transcription Factor family | AT3G24440 | 46.448 | 7.01e-153 | 449.0 | |
| Cich1g03977 | . | 1542 | 1706 | PHD Transcription Factor family | AT5G35210 | 84.242 | 3.64e-86 | 291.0 | |
| Cich1g05010 | . | 615 | 661 | PHD Transcription Factor family | AT5G22260 | 44.681 | 3.09e-06 | 49.3 | |
| Cich1g05182 | . | 27 | 160 | PHD Transcription Factor family | AT5G58610 | 28.261 | 1.42e-08 | 54.3 |