AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cich4g04563 ATGGCGACTCGTGTTCTCCTTCGCACCCTTCTCACCTCCGCCAATCAAACCCTAATCCCTCGCTCCTTTACCAGTTCTGCTTATCTTATGCGCTTCCGCCCTGTTGTCGCCATCGCCGCCGCTAATATCCGTCAGTCCTCACTTGCGGCTACCAGTGCCCGTGCTTTCTCAACTCGTCAGACCACATCGTCTCTGAATGATTCGAACCCTAATTGGACAAATCGTCCCCCAAAGGAGACGATTCTACTCGATGGTTGCGATTTTGAGCACTGGCTTGTCGTGGTGGAGACACCCCAAGGCGAGCCGACTAGAGACGAGATAATCGAGTCGTATATCAATACCCTAGCTCAGGTCGTCGGCAGCTATGATGAAGCAAGAATGAAGATCTACTCAGTCTCAACAAGATGCTATTACGCATTTGGAGCCCTTGTGTCTGAAGAAGTTTCTTACAAAATCAAGGAGTTACCTGGTGTTCGTTGGGTGCTCCCTGATTCTTACTTGGATGTTAAGAACAAAGATTACGGAGGTGAACCATTTATTGATGGAAAGGCGGTTCCATATGATCCAAAGTACCATGAAGAGTGGATTAGAAACAATGCGCGTGCCAATGAGAGAAATAGGAGAAATGACAGGCCTAGAAACTTTGACCGGTCAAGAAACTTTGAAAGAAGAAGAGAAAACATGCAAAACAACCAAGGACCACCCGGTATGGGCGGTCCACCACCTCCAACCAACTTCCGCGGTCCACCACCCAACATGGGAGGTGGACCACCTAAGATGGGTGGTGGACCACCACCCAGTCAAATGGGTGGTGGACCACCACCCAGTCACATGGGAGGCGGACCACCCAACATGGGAGGACCACCATCCAATATGGGTGGACCTCCAAACATGGGAGGTCCACCACCCAGTAACATGGGTTATGGAGGTCAGTCCAATAACTGGAATGGCCCACCACAGCCCTATGGCGGAGGGCCGCCAAACATGGGAGGAGGAATGAGGCCTAATAATGGGCCGCCTTCTAATTACCAGCAGCAGGGGTGGAATGGACCAAATGCTGGAGGAAACGGGTATCAATCTGGTGGAAACCCTTACCAGAATCAGAATGTACCTGGAAGAGACATGCCGCCTGCAGCTGCCAACTATGAATGA 1152 51.04 MATRVLLRTLLTSANQTLIPRSFTSSAYLMRFRPVVAIAAANIRQSSLAATSARAFSTRQTTSSLNDSNPNWTNRPPKETILLDGCDFEHWLVVVETPQGEPTRDEIIESYINTLAQVVGSYDEARMKIYSVSTRCYYAFGALVSEEVSYKIKELPGVRWVLPDSYLDVKNKDYGGEPFIDGKAVPYDPKYHEEWIRNNARANERNRRNDRPRNFDRSRNFERRRENMQNNQGPPGMGGPPPPTNFRGPPPNMGGGPPKMGGGPPPSQMGGGPPPSHMGGGPPNMGGPPSNMGGPPNMGGPPPSNMGYGGQSNNWNGPPQPYGGGPPNMGGGMRPNNGPPSNYQQQGWNGPNAGGNGYQSGGNPYQNQNVPGRDMPPAAANYE 383
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cich4g04563 383 PANTHER MULTIPLE ORGANELLAR RNA EDITING FACTOR 2, CHLOROPLASTIC-RELATED-RELATED 16 229 IPR039206 GO:0005739(PANTHER)|GO:0016554(InterPro)|GO:0080156(PANTHER)
Cich4g04563 383 MobiDBLite consensus disorder prediction 203 226 - -
Cich4g04563 383 MobiDBLite consensus disorder prediction 335 370 - -
Cich4g04563 383 MobiDBLite consensus disorder prediction 235 302 - -
Cich4g04563 383 Pfam Multiple organellar RNA editing factor 1, MORF domain 88 179 IPR054059 -
Cich4g04563 383 MobiDBLite consensus disorder prediction 203 383 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cich4g04563 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
60652 Cich1g01868 Cich4g04563
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cich Cich-Chr4:132325835 Cich3g02962 Cich-Chr3:55473787 dispersed
Cich Cich-Chr9:33608406 Cich4g04563 Cich-Chr4:132325835 transposed
Cich Cich-Chr1:27141861 Cich4g04563 Cich-Chr4:132325835 transposed
Cich Cich-Chr3:32062692 Cich4g04563 Cich-Chr4:132325835 transposed
Cich Cich-Chr1:36852317 Cich4g04563 Cich-Chr4:132325835 wgd