AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cich4g04611 | ATGTCCCCCTCCGGTGTTCAAAAGGAAAGAATGGTAGAAGAAGACATGTATGTATTATCATCAACCGGTGATATTTTGTTTTCTCCATTGGCGAAGCCTTACCCTCACAAACCTCCAAAATGTTCAGATTGTGCCCCTCTTTTCATGAAGGCTTATGATAAGCGTAACGCTGGTGCTGTCATTCATAGCCACGGAATGGAATCCTGTCTTGTAACTATGATGGATCCATTAGCAAAAGAGTTTAGGATCACTCATATGGAGATGATTAAAGGAATTCAAGGCCATGGTTACTATGACGAGCTTGTGGTTCCCATAATCGAAAACACAGCTCAAGAAAGAGAATTGACAGAATCACTTGCTGCAGCAATTGAAGCATACCCAAAAACAACTGCTGTTCTTGTCAGAAACCATGGTATTTATGTATGGGGAGATTCCTGGATTAGTGCCAAAACTCAAGCTGAATGTTACCACTATCTCTTTGAAGCTGCGATTAAACTTCATCAATTAGGCCTTGACTGGTCAACTCCAAGTCATGGTCCTAAACCACTTTTATCCAATCAAAGTCAAAGTCAAACTACAAACCTATCATATCGTTGCATTGTTCTTGACATTGAAGGGACCACCACGCCTATATCTTTTGTCACAGATGTTCTTTTTCCATATGCACGTGACAATGTCAGAAAGCACTTGGAAGAAACATATGACACTCATGATACACAAGATGATATTAAGTTGTTACGCTCTCAAGTAGAAGATGATTTACAAAATGGTGTTGCAAATGCTGTTCCTGTTCCATCTGATGAAGCGGGAAAACAGGAGGTGATTGCTGCTTTGGTTGCTAATGTTGAAGGAATGATAAAATCTGACAGAAAAATCACATCTTTAAAACAGTTACAAGGTCACATATGGCGGACTGGATTTGAAAAAAATGAACTCAAAGGAGTTGTTTTTGATGATGTTCCTGGCTCTCTTCAAAAATGGCATTCTTCTGGTATAAAAGTGTATATATATTCAAGTGGTAGCAGATTGGCGCAAAGGCTTTTATTTGGGTATTCAAATCACGGGGACTTGAGAACGTATTTGAGTGGATTTTTTGACACGACAGTGGGGAACAAGAAGGAAACAAAAAGTTATGTTGAAATTTCAGAATCACTTGGAGTTCATAAGCCATCAGATGTCTTATTTGTAACAGACGTATTTCAAGAAGCTGTAGCTGCAAAGGCAGCTGGTTTGGAGGTGATAATATCTGTTCGGCCAGGAAACGGGCAGCTGCCCGAGAACCATGGATTTAAGACGGTCAAGTCTTTTTCGGAGATATGTGGGTGA | 1326 | 39.97 | MSPSGVQKERMVEEDMYVLSSTGDILFSPLAKPYPHKPPKCSDCAPLFMKAYDKRNAGAVIHSHGMESCLVTMMDPLAKEFRITHMEMIKGIQGHGYYDELVVPIIENTAQERELTESLAAAIEAYPKTTAVLVRNHGIYVWGDSWISAKTQAECYHYLFEAAIKLHQLGLDWSTPSHGPKPLLSNQSQSQTTNLSYRCIVLDIEGTTTPISFVTDVLFPYARDNVRKHLEETYDTHDTQDDIKLLRSQVEDDLQNGVANAVPVPSDEAGKQEVIAALVANVEGMIKSDRKITSLKQLQGHIWRTGFEKNELKGVVFDDVPGSLQKWHSSGIKVYIYSSGSRLAQRLLFGYSNHGDLRTYLSGFFDTTVGNKKETKSYVEISESLGVHKPSDVLFVTDVFQEAVAAKAAGLEVIISVRPGNGQLPENHGFKTVKSFSEICG | 441 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cich4g04611 | 441 | FunFam | Probable bifunctional methylthioribulose-1-phosphate dehydratase-enolase-phosphatase E1 | 1 | 181 | - | - | |
| Cich4g04611 | 441 | NCBIfam | acireductone synthase | 198 | 437 | IPR023943 | GO:0000287(InterPro)|GO:0019509(InterPro)|GO:0043874(InterPro) | |
| Cich4g04611 | 441 | SUPERFAMILY | AraD-HMP-PK domain-like | 1 | 177 | IPR036409 | - | |
| Cich4g04611 | 441 | Gene3D | - | 1 | 183 | IPR036409 | - | |
| Cich4g04611 | 441 | Pfam | haloacid dehalogenase-like hydrolase | 197 | 410 | - | - | |
| Cich4g04611 | 441 | NCBIfam | methylthioribulose 1-phosphate dehydratase | 1 | 169 | IPR017714 | GO:0005737(InterPro)|GO:0019509(InterPro)|GO:0046872(InterPro) | |
| Cich4g04611 | 441 | Hamap | Enolase-phosphatase E1 [mtnC]. | 196 | 439 | IPR023943 | GO:0000287(InterPro)|GO:0019509(InterPro)|GO:0043874(InterPro) | |
| Cich4g04611 | 441 | SFLD | enolase-phosphatase | 197 | 439 | IPR023943 | GO:0000287(InterPro)|GO:0019509(InterPro)|GO:0043874(InterPro) | |
| Cich4g04611 | 441 | PANTHER | ENOLASE-PHOSPHATASE E1 | 194 | 439 | - | GO:0019509(PANTHER)|GO:0043874(PANTHER) | |
| Cich4g04611 | 441 | FunFam | Probable bifunctional methylthioribulose-1-phosphate dehydratase-enolase-phosphatase E1 | 307 | 439 | - | - | |
| Cich4g04611 | 441 | SFLD | C1.5.4: Enolase-phosphatase Like | 197 | 439 | - | - | |
| Cich4g04611 | 441 | FunFam | Probable bifunctional methylthioribulose-1-phosphate dehydratase-enolase-phosphatase E1 | 211 | 307 | - | - | |
| Cich4g04611 | 441 | SUPERFAMILY | HAD-like | 197 | 439 | IPR036412 | - | |
| Cich4g04611 | 441 | Hamap | Enolase-phosphatase E1 [ENOPH1]. | 198 | 439 | IPR027511 | GO:0019509(InterPro) | |
| Cich4g04611 | 441 | Gene3D | - | 307 | 439 | IPR023214 | - | |
| Cich4g04611 | 441 | Gene3D | - | 211 | 306 | - | - | |
| Cich4g04611 | 441 | SMART | Aldolase-II-2 | 1 | 164 | IPR001303 | - | |
| Cich4g04611 | 441 | Pfam | Class II Aldolase and Adducin N-terminal domain | 1 | 163 | IPR001303 | - | |
| Cich4g04611 | 441 | CDD | HAD-EP | 199 | 420 | IPR023943 | GO:0000287(InterPro)|GO:0019509(InterPro)|GO:0043874(InterPro) |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cich4g04611 | K16054 | methylthioribulose 1-phosphate dehydratase / enolase-phosphatase E1 [EC:4.2.1.109 3.1.3.77] | ||||
| Cich4g04611 | K09880 | enolase-phosphatase E1 [EC:3.1.3.77] | ||||
| Cich4g04611 | K08964 | methylthioribulose-1-phosphate dehydratase [EC:4.2.1.109] |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 63047 | Cich4g04611 | Cich7g00640 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Cich | Cich-Chr3:56286203 | Cich4g04611 | Cich-Chr4:133396424 | transposed | |
| Cich | Cich-Chr4:7485892 | Cich4g04611 | Cich-Chr4:133396424 | transposed | |
| Cich | Cich-Chr4:18451074 | Cich4g04611 | Cich-Chr4:133396424 | transposed | |
| Cich | Cich-Chr5:103215922 | Cich4g04611 | Cich-Chr4:133396424 | transposed | |
| Cich | Cich-Chr6:7533660 | Cich4g04611 | Cich-Chr4:133396424 | transposed | |
| Cich | Cich-Chr4:133396424 | Cich7g00640 | Cich-Chr7:20219448 | wgd |