AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cich4g04619 ATGTCCTTATCTGGTTCAAGGGAGAAGGACAAATTTCTCCCCTTTTTGTGCAGATATCTCAGTAGAAAAAAGGTTGTAATGCTAATTTTAGTTTCATTTGCTCTCATGGCTTTCTTAACAAGCTTCTTTACCACCAATAGAGAAGATGCATCAGAGAGCACTATATTTGATCATTTTAACGAAGCATATAACACATCTTTACAATTCTCGAGAAAGTTTAATAATTCATCTAGTCAGGCAACTCTGTCTGTATGTGAAGAAAACCCTATTCGCCATTTTTCATCTCCATCACTTTCTACAGAATCCGCCATTTTTCACAGCAATTTCTGTCAGAATTTTGCATTCCCACCCCCTCCTCCCGGTGTTAGAAGACGACCCGGACCTCGACCTTGCCCTGTATGCTACCTTCCAGTGGAGGCTGCAATTGCCAGCATGCCACGTGTCCCATCACCATCACCAGTGTTGAATCACTTAACTTATTTTCATGAAGAAAGTTCTACAAAAACCGAACCACATGAAGGGTCGGATTTTGGTGGGTATCCGTCTTTAAAGCAAAGGAATGAATCTTTTGACATCAAAGAATCAATGACTGTACATTGCGGATTTGTAAAAGGATGTAGACCCGGTTACAAAACGGGATTTGACATCGACATATCGGATCTTGTTGAATTGGAGCAGTTTCATGACATCATCGTTGCATCAGCAATATTTGGAAACTACGATGTAATTCAACAGCCGACTAAAATCAGCGATCACGCAATTAAAAACATCCCGTTTTATATGTTTATCGATGAAGAAACCGAAAATTACATGAGAAATTCAAGTCTTTTAGACTATAAAATGAAAGTCGGATTATGGAGAATTATTGTTGTCCGGAACATTCCTTACACTGATGCTAGACGAAACGGAAAGGTGCCAAAGCTTTTACTACATAGGTTATTTCCGAATGTTAAATACTCTATTTGGATCGATGGAAAGCTGAAATTAGTAGTGGACCCGTATCAGCTTCTAGAAAGATTTTTATGGCGGCACAATGCCACGTTTGCTATCTCAAAACATTATCGGCGGTTTGATGTGTTTGAGGAAGCCGAAGCTAATAAGGCGGCGGGGAAGTACGATAATAAGTCGATTGATTATCAGATTGACTTTTATAGAAGCGAGGGTTTGACTCCTTATTCTGAAACCAAGCTTCCTATTATAAGTGATGTTCCGGAAGGTTGCGTGATTATACGGGAACACATTCCGATTACAAATTTGTTCACGTGTTTGTGGTTTAATGAAGTTGACCGTTTTACTTCAAGAGACCAGTTGAGTTTTGCGGCTGTAAGAGACAAAATCATGGGACAAGTTGATTGGAGTGTTAACATGTTTATGGATTGTGAAAGAAGAAACTTTGTAATACAGGCGTACCATAGAGATTTGCTGGAGCATATGCCGCCACCTGTGCCTAGAATGAGTAATTTAAAGCGGAATCGTGATTCCATTCCGGTTACTAAAAGTGAAGGAGGGAATTTGATTGGTAGGAATCCGGTAAAGAAGAGTCCTGTTAAACGTGGGAAAGGGGAGAGGAGATCGAGATCAAGGAGGCATTCGAAGAATCCGAGTACCAGGGACAATTTGGTCTTTTGA 1629 40.09 MSLSGSREKDKFLPFLCRYLSRKKVVMLILVSFALMAFLTSFFTTNREDASESTIFDHFNEAYNTSLQFSRKFNNSSSQATLSVCEENPIRHFSSPSLSTESAIFHSNFCQNFAFPPPPPGVRRRPGPRPCPVCYLPVEAAIASMPRVPSPSPVLNHLTYFHEESSTKTEPHEGSDFGGYPSLKQRNESFDIKESMTVHCGFVKGCRPGYKTGFDIDISDLVELEQFHDIIVASAIFGNYDVIQQPTKISDHAIKNIPFYMFIDEETENYMRNSSLLDYKMKVGLWRIIVVRNIPYTDARRNGKVPKLLLHRLFPNVKYSIWIDGKLKLVVDPYQLLERFLWRHNATFAISKHYRRFDVFEEAEANKAAGKYDNKSIDYQIDFYRSEGLTPYSETKLPIISDVPEGCVIIREHIPITNLFTCLWFNEVDRFTSRDQLSFAAVRDKIMGQVDWSVNMFMDCERRNFVIQAYHRDLLEHMPPPVPRMSNLKRNRDSIPVTKSEGGNLIGRNPVKKSPVKRGKGERRSRSRRHSKNPSTRDNLVF 542
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cich4g04619 542 PANTHER ALKALINE CERAMIDASE-RELATED 8 496 IPR006852 -
Cich4g04619 542 MobiDBLite consensus disorder prediction 513 531 - -
Cich4g04619 542 Pfam TOD1-MUCI70, glycosyltransferase-like domain 158 471 IPR048354 -
Cich4g04619 542 MobiDBLite consensus disorder prediction 478 542 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cich4g04619 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cich Cich-Chr3:29511428 Cich4g04619 Cich-Chr4:133530600 dispersed
Cich Cich-Chr4:133530600 Cich5g04232 Cich-Chr5:120293426 dispersed
Cich Cich-Chr4:133530600 Cich4g04623 Cich-Chr4:133554229 proximal