AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cich4g04627 ATGAGAGGACCAGTGATCGGAAAGTACCCATCAAGTGACGGAAATGGCGACGTCGGCGCCGGAAACGGAATCATAAAGTACAACCGGAAATGCAGAGATATTGTGTTTCTTGTTTTCTTCATAGCCTTCTGGATCGCCATGATTGTTAACTCCAGCTTCGGTTTCAACCAAGGAAACCCATTAAGGCTAAATTTCGGGTTGGATTATAAAGGAAATGTATGTGGAGGCAAACATTCCGATTTTGACCTCCGTGAATTAGAACTAAAATACTGGGTGAACCCTAACCAAGTTTACCAAAGTGGGATGAAGAACAGCGGGGTAAAATTGTCAAATGCTCGAACCATATGCTTATTAGACTGTCCAATACCCTCGGAAGATTCTTTAAATTGGGTTTGTGATTATCCAGAGGGAGATATTCGTATTTCATTAGATGATTGGATCGATATGAATTATGATTATTTTGCCGATCTTACCCCTGAACTAAGAAACACTTCTCTTCAACTTCAAGGCCCTTGTTACCCCGTCATTTTTCCAAGCGTAAACGTTTATTGGAGTTGCCAGTTTATTGACCGCCCGTCAAATGTTTCTTTGACTAATTGGAAACGAATGAATGGAGTTACAATCAACGATGATATGGTGATAGATAAATCTATTCATAACTCCATTAACGCACGATCATCCGTATTGAAGAGATATGTGGCGGATGTTGGAAAATCATGGCCCGTGTTAATTGTATGTGGAGGACTTTTGCCTTTATTTTTATCGCTTTTATGGCTTCTAATGATCCGACATTTTGTGACCGCAATGCCTTGGGTTACCGTTTTTCTCTTTAATGGCCTCATTATATCAGTCACAATGTTCTACTACATGAAAGCCGGATGGATTGGAAACGATGCTATCTCACCCATAATCGGCGAACACGATCCGTACTATCATGTCACTTCTAGGGAGCAACATCATATCCGTGCAGCCGCTTTACTCATGACATGTGTCATGATCGTATCTGTTCTGTCATCAATCGCGATTGTTCGCCGGATTCTCATGGCAACATCAGTACTCAAGGTAGCAGCGAAGGTAATCGGAGAAGTTCACGCGTTGATAATTTTTCCAGCGATCCCATACCTAATTCTGGCGGTGTTTTACATGATTTGGCTATCAGCCGCCCTCCATCTTTTCAGCTCCGGCGAGATTGTACGCAATGATTGTAGTACAAATTGTTGTGCGTATGATTTGAAAGCCAAAAGAGTGAGTTGTGATGATTGTTGCGGGTATAGCATTCATTACACCAATCACATTGCAGCTTCGATTCTATTCCACTTGTTCGGATGCTATTGGGCCACTCAATTCTTGATCGCGTGTTCTTCCACTGTAATTGCTGGTTCCGTTGCTTCTTACTATTGGGCCCGCGGTGAATCATCGACAACGATTCCGTTTCTTCCCGTTTTCTCCTCAATGAAGCTACTCACACGTTACAGCCTCGGGTCCATAGCAATCGGTTCTTTAATCGTATCGTTCGTCGAGTCAACTCGGTTCATACTCGAAGCCATTCGTAGGAGACTAAAAGTCGCTGACATCATGCCCGAAAACTTTATCAAAAGAATGATGTTCCACACTTCCCGGTTTTGCTTAAAGGGTATCGAATTAACGATAAAATCTGTAAACCGTAACGCATACATTATGATTGCGATAACGGGAAAAGGGTTCTTCAAAGCTTCAGAAATAGCAACGAATTTGATAATTAGTAATATTTTGCGTATCGGAAGAGTGAATGTGATTGGAGATGTTATTTTGTTTCTTGGAAAGCTTTGTGTGAGTCTTGCTAGTGCGCTTTTCGCGTTTCTTATGTTGGACACTCACAAGTACAAATCGTCTCACAACAAGATCACATCCCCGTTGTTTCCCGTAATGGTGTGTTGGGGATTAGGGTATGTGGTGGCGACATTGTTTTTTGGGGTGGTGGAAATGTCGATCGATACGATTATTCTTTCGTATTGTCAAGATGCGGAGGAACATCAAGGGACCGCGCATTACGCGCCTCCACTTTTGATCGAGACTTTTGATGAACAAAATGAGGTGCAAAGAATTGGACAATGA 2094 42.22 MRGPVIGKYPSSDGNGDVGAGNGIIKYNRKCRDIVFLVFFIAFWIAMIVNSSFGFNQGNPLRLNFGLDYKGNVCGGKHSDFDLRELELKYWVNPNQVYQSGMKNSGVKLSNARTICLLDCPIPSEDSLNWVCDYPEGDIRISLDDWIDMNYDYFADLTPELRNTSLQLQGPCYPVIFPSVNVYWSCQFIDRPSNVSLTNWKRMNGVTINDDMVIDKSIHNSINARSSVLKRYVADVGKSWPVLIVCGGLLPLFLSLLWLLMIRHFVTAMPWVTVFLFNGLIISVTMFYYMKAGWIGNDAISPIIGEHDPYYHVTSREQHHIRAAALLMTCVMIVSVLSSIAIVRRILMATSVLKVAAKVIGEVHALIIFPAIPYLILAVFYMIWLSAALHLFSSGEIVRNDCSTNCCAYDLKAKRVSCDDCCGYSIHYTNHIAASILFHLFGCYWATQFLIACSSTVIAGSVASYYWARGESSTTIPFLPVFSSMKLLTRYSLGSIAIGSLIVSFVESTRFILEAIRRRLKVADIMPENFIKRMMFHTSRFCLKGIELTIKSVNRNAYIMIAITGKGFFKASEIATNLIISNILRIGRVNVIGDVILFLGKLCVSLASALFAFLMLDTHKYKSSHNKITSPLFPVMVCWGLGYVVATLFFGVVEMSIDTIILSYCQDAEEHQGTAHYAPPLLIETFDEQNEVQRIGQ 697
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cich4g04627 697 PANTHER CHOLINE TRANSPORTER-LIKE (SLC FAMILY 44) 24 690 IPR007603 GO:0022857(InterPro)|GO:0055085(InterPro)
Cich4g04627 697 Pfam Plasma-membrane choline transporter 327 669 IPR007603 GO:0022857(InterPro)|GO:0055085(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cich4g04627 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cich Cich-Chr2:32559760 Cich4g04627 Cich-Chr4:133597156 dispersed
Cich Cich-Chr3:137772584 Cich4g04627 Cich-Chr4:133597156 dispersed
Cich Cich-Chr4:133597156 Cich7g02531 Cich-Chr7:92511947 dispersed