AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cich4g04634 ATGGGGGATCGATTAAGGTCAGCCACGTTAGATGACTTGCCTTCGCATTTGATTTTTGAAATCTTGACATCCGGGGCCCAATTGGGCGGTGTGGATCTCGCCTGTTTGGAGCTAACTAACACAACTTTTCGAGGTAGCTACGGATTAGTCCCTCACAATTTAAGGTCTTTGGTTGACTTTGCGGCTTTTCAGCTTTGTGGGTCACATTCTATATACGTTTCCTTGAGTAACAGAGCTCAAGAAGAGCTCTTAGCTCGATGCGGCGGTAACTGGAAAAGGGTTTTGAGGTTCTTGCAATCAGTCAACCAGTATTCCGACATCGTTGAGACCTCTTCCGGCAATCAGATGCAAATTAGGAGCGGAAGGTATCACACATTACTGATAAAAGATTCAACGGTTTACTCATGTGGTTCAAGTTTATGTGGTGTTCTTGGTCATGGTCCCGAAACAACGCAATGTATCGCATTCATTCCGATCAAATTCCCATATCCCGCCTACGTAACGGACGTTTCCGCCTCCCATAATCATGCTGCCTTCGTGACAAAATTGGGCGAGGTGTTCACATGTGGTGATAATTCGTCGTTTTGTTGTGGGCATAGCGATACAAACCGGCCAATATTCAGACCTAGACTCGTTGAAGCACTGAAAGACGTTCCATGCAAGCAGGTTGCCGCCGGCGTTAGCTTCACCGTGTTTCTCACAAAAGAAGGTCAAGTATACACATGTGGGACCAGTGTACACGGTCAACTCGGCCATGGTGACACCCTGGACAGACCGTCACCGAAACTTGTCGAATCACTTGGAACCATCGGTCCAGTGGTTCAGATAGCCGCCGGTCCAAGCTATACCCTTGCGGTCACTAACGATGGAACCGTTTACTCATTTGGGTCTGGTTCCAATTTCTGTCTCGGCCATGGCGAACAGCACAATGAACTCCGCCCTAGGCCGCTCCTATCTTTCAGGCGGAAAGGAATCCATATTGTTCGTGTTTCCGCTGGCGATGAACATGTGGTCGCACTCGATTCCAACGGATTCGTTTACACATGGGGAAAAGGCTACTGTGGTGCACTTGGACATGGCGATGAGATCGATAAGACCACACCGGCGCTTCTAACCAGCCTCAAGAATCATCTTGCTGTACAGGTGTGTGCGAGCAAGAGGAAGACGTTTGTATTGGTGGATAATGGGTGTTTATATGGATTTGGATGGATGGGATTTGGGAGTTTAGGGTTTCCGGATAGGGGTGTATCGGATAAAGTGTTGAAGCCTAGTATGCTTTATAGTTTAAAAGATCATCATATTTGTCAAGTGAGCACTGGTTTGTATCATTCGGTTGTGGTTACGAATCGAGGCAGGATATTTGGATTTGGGGACAATGAAAGGGCGCAACTTGCACATGATAAATTAAGGGATTGTCTCCACCCGACTGAAATCTTGGTTGAAGAAGGAAGTGAAAATGGTGGATTTTGTTTGTAA 1476 46.88 MGDRLRSATLDDLPSHLIFEILTSGAQLGGVDLACLELTNTTFRGSYGLVPHNLRSLVDFAAFQLCGSHSIYVSLSNRAQEELLARCGGNWKRVLRFLQSVNQYSDIVETSSGNQMQIRSGRYHTLLIKDSTVYSCGSSLCGVLGHGPETTQCIAFIPIKFPYPAYVTDVSASHNHAAFVTKLGEVFTCGDNSSFCCGHSDTNRPIFRPRLVEALKDVPCKQVAAGVSFTVFLTKEGQVYTCGTSVHGQLGHGDTLDRPSPKLVESLGTIGPVVQIAAGPSYTLAVTNDGTVYSFGSGSNFCLGHGEQHNELRPRPLLSFRRKGIHIVRVSAGDEHVVALDSNGFVYTWGKGYCGALGHGDEIDKTTPALLTSLKNHLAVQVCASKRKTFVLVDNGCLYGFGWMGFGSLGFPDRGVSDKVLKPSMLYSLKDHHICQVSTGLYHSVVVTNRGRIFGFGDNERAQLAHDKLRDCLHPTEILVEEGSENGGFCL 491
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cich4g04634 491 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 113 316 IPR051210 -
Cich4g04634 491 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 437 447 IPR000408 -
Cich4g04634 491 Pfam Regulator of chromosome condensation (RCC1) repeat 434 463 - -
Cich4g04634 491 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 344 395 IPR000408 -
Cich4g04634 491 SUPERFAMILY RCC1-BLIP-II 113 415 IPR009091 -
Cich4g04634 491 Gene3D - 87 269 IPR009091 -
Cich4g04634 491 Gene3D - 270 487 IPR009091 -
Cich4g04634 491 Pfam Regulator of chromosome condensation (RCC1) repeat 289 340 IPR000408 -
Cich4g04634 491 Pfam Regulator of chromosome condensation (RCC1) repeat 184 233 IPR000408 -
Cich4g04634 491 Pfam Regulator of chromosome condensation (RCC1) repeat 132 180 IPR000408 -
Cich4g04634 491 Pfam Regulator of chromosome condensation (RCC1) repeat 343 392 IPR000408 -
Cich4g04634 491 Pfam Regulator of chromosome condensation (RCC1) repeat 236 286 IPR000408 -
Cich4g04634 491 SUPERFAMILY RCC1-BLIP-II 422 478 IPR009091 -
Cich4g04634 491 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 290 343 IPR000408 -
Cich4g04634 491 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 396 450 IPR000408 -
Cich4g04634 491 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 237 289 IPR000408 -
Cich4g04634 491 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 184 236 IPR000408 -
Cich4g04634 491 PRINTS Chromosome condensation regulator RCC1 signature 327 340 IPR000408 -
Cich4g04634 491 PRINTS Chromosome condensation regulator RCC1 signature 346 362 IPR000408 -
Cich4g04634 491 PRINTS Chromosome condensation regulator RCC1 signature 453 467 IPR000408 -
Cich4g04634 491 PRINTS Chromosome condensation regulator RCC1 signature 291 307 IPR000408 -
Cich4g04634 491 PRINTS Chromosome condensation regulator RCC1 signature 437 453 IPR000408 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cich4g04634 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cich Cich-Chr3:1767969 Cich4g04634 Cich-Chr4:133683397 dispersed
Cich Cich-Chr3:49724678 Cich4g04634 Cich-Chr4:133683397 dispersed
Cich Cich-Chr4:133683397 Cich6g03250 Cich-Chr6:86876607 dispersed
Cich Cich-Chr4:133683397 Cich3g03608 Cich-Chr3:69889619 transposed