AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cich4g04652 ATGGAGGGTATTGATGCTAACGATAAGTACGCTAAAGAATTAGAAGTAGGCGTTAGAGTTGTACAGCTTGCTTGTTATCTATGCCAAAAGGTGCAAAAGGGTTCGATTGGTCCGACCCCTGATCAGGTCTTCTCTAAAGACGACGATTCACCGGTTACCGTCGCCGATTGGAGTGTACAAGCAATGATTAGCTGGATTCTATCAGAATCATTTGGTAAACAAAATGTCTCAATTGTAGCTGAAGAAGACACACAAACACTATCCGATTCAAACAGCACCCACTTACTATCATCTGTTATTTCAACCGTGAACGATAGTTTAGCCATGGCACCCCGGTTCGGTCTCAAGGGTCCAACCGCACCCCTCGGCCCCACACAAGTTCTTGAAGCCATTAACCACTGCAATTCAACCGGTGGTCCAATGGGAAAGCACTGGGTCCTTGACCCTGTTGATGGGACATTAGGGTTTGTTCGTGGTGACCAGTACGCTGTTGCTCTTGCTTTGATTGAAAACGGGCAGGTTGTGGTCGGTGTTCTTGGCTGCCCGAATTATTCGAGTAAGAAGAAATTGGTGAATAATAGTGTGAGTAAATCGGATTTGTGGCAAGAAGGGTGTGTGATGTATGCGAGAAAAGGTAGCGGTCAAGCTTGGATGCAGCCATTGGTGAACGGTGGTGGGTCCCTTGTGTGGCCCAATTCAGCTAGCCGGATTCGGGTTTCTTCAATTGATGATCCTTCAATGGCTACGTTTTGTGAACCGGTTGAAAAAGCCAACTCTAACCATTCTTATAGTGCGGGAATTGCTTACAGTTTAGGACTTCGAAAGAAACCATTGCGGGTGTATAGCATGGTAAAATACGCAGCAATAGCACGTGGAGATGCAGAAATATATATGAAATTTGCAAAAGCCGGATATAAAGAAAAGATATGGGACCATGCTGCCGGGGTGGTGATAGTGGAAGAAGCCGGCGGTGTTGTGACGGATGCTGGTGGCCGGCCGCTTGATTTTTCAAGAGGGGTGTATCTTGAAGGGCTTGACCGGGGAATTGTTATTTGTTCAGGGGTGAATTTGCATGATAAAATTATAGGGGCTGTTTATGCAAGTTGGGATTCTTCTCATCTATAG 1125 45.96 MEGIDANDKYAKELEVGVRVVQLACYLCQKVQKGSIGPTPDQVFSKDDDSPVTVADWSVQAMISWILSESFGKQNVSIVAEEDTQTLSDSNSTHLLSSVISTVNDSLAMAPRFGLKGPTAPLGPTQVLEAINHCNSTGGPMGKHWVLDPVDGTLGFVRGDQYAVALALIENGQVVVGVLGCPNYSSKKKLVNNSVSKSDLWQEGCVMYARKGSGQAWMQPLVNGGGSLVWPNSASRIRVSSIDDPSMATFCEPVEKANSNHSYSAGIAYSLGLRKKPLRVYSMVKYAAIARGDAEIYMKFAKAGYKEKIWDHAAGVVIVEEAGGVVTDAGGRPLDFSRGVYLEGLDRGIVICSGVNLHDKIIGAVYASWDSSHL 374
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cich4g04652 374 NCBIfam 3'(2'),5'-bisphosphate nucleotidase 10 372 IPR006239 GO:0006790(InterPro)|GO:0008441(InterPro)
Cich4g04652 374 ProSitePatterns Inositol monophosphatase family signature 2. 310 324 IPR020550 GO:0046854(InterPro)
Cich4g04652 374 Pfam Inositol monophosphatase family 48 365 IPR000760 -
Cich4g04652 374 FunFam PAP-specific phosphatase HAL2-like 238 371 - -
Cich4g04652 374 ProSitePatterns Inositol monophosphatase family signature 1. 145 158 IPR020583 -
Cich4g04652 374 PANTHER PHOSPHATASE 6 370 IPR051090 GO:0000103(PANTHER)|GO:0008441(PANTHER)|GO:0042578(PANTHER)
Cich4g04652 374 Gene3D - 9 225 - -
Cich4g04652 374 SUPERFAMILY Carbohydrate phosphatase 10 367 - -
Cich4g04652 374 CDD PAP-phosphatase 13 367 - -
Cich4g04652 374 Gene3D - 238 368 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cich4g04652 K01082 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cich Cich-Chr3:31785892 Cich4g04652 Cich-Chr4:134076205 dispersed
Cich Cich-Chr3:31017890 Cich4g04652 Cich-Chr4:134076205 wgd