AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cich4g04665 | ATGGCTAGCAGGAATGAACCTTCTGATGCTTACACTGAAACCACTGATGAAGAAGAAAAAATGTACAACAAGATCCTTCACGGCATATGCAGTCCACGTGGGAGAACACGAAATGACCAAAGATCTCCATGGGTCCAAGATTGGAACCAGGTTTTCCTACTGGTGTGTGCGATGGGTCTGTTCGTAGACCCGCTCTTCTTCTACACTCTGTCCATAAGCGAGTCGTGCATGTGCGTGTACGTCGATCGGTGGTTGGCCGTCACAGTGACGGTGCTCCGGTGCATGACGGACGCGTTGCACGTGTGGAATATGTGGTTGCAGTTCAAGATGAAAAGATCATCTCCAGCGTACCAACAGTTGAACACCGATGAGATGACGGTACGGAAAGTGGTGATGCGGTTGATGACGGAAGCCAAGAACCGATTCTCACTTGATATCTTCGTCATCCTACCAATTTCCCAGGTAGTATTATGGGTGGTCATTCCGACATTGCTGGAAAAAGGTTCGACGACCTTTGTGATGACGGTTTTCCTAATTATGTTTATCTTCCAATACCTACCAAAGATCTATCACTTTGTCCGCCTTTTACGACGCACGCAAAATCGCTCGGGCTATATTTTCGATACAGTTTGGTGGGGAGTTGCTTTCAACATGATCGCCTATTTCGTTGCCTCTCATGCTGTGGGTGCTTGTTGGTACTTGCTTGGAACTCAGAGGGTTGCCAGATGCTTGATGGAGAAATGTATGGAAACAAATAGATGCACACCAAGAGTATTAACGTGTGAAGAGTTCATATATTACGGAACAAATAGACTGGTGGGAGACATGTCCAGACTTTTATGGGGCGAGAACAGAAGTGCAAGGTCTACTTGCTTACAAGATAACAACGGGTTTACTTTTGGAGCTTATAAATGGACAGTTCAACTCGTTAGCAACAAGAGCAGATTGGAGAAGATACTCTTCCCCATATTTTGGGGTTTGATGACACTTAGTACATTTGGTAATTTGGAGAGTGCAACAGATTCGTTGGAAGTGGTTTTTACCGTCGCTGTTCTGACGACTGGGCTCCTTTTGGTCACCATGTTGATAGGGAACATTAAGGTGTTTTTTCATGCAACGACGTCTAAGAAACAAGCAATGCAGTTGAAAATGAGAGACATTGAGTGGTGGATGAGGAGGAGAAACCTCCCTCAAGGATTTAGACAAAGAGTTAGAAATTACGAGAGACAAAATTGGGCAGCTATGCGGGGAGTCGATGAGAGTGAGATGATCTGCAACTTGCCAGAGGGCCTGCGAAGGGACATCAAGTATCATCTCTGCTTGGATTTGGTTCGACAGGTACCCTTATTTCAACATATGAACAACTTAGTCCTTGAGAACATATGTGACCGTGTTAGACCACTTATTTTCACCAAAGGAGAAATAATTACTCGAGAGGGAGATCCGGTACAAAGGATGTTATTTATAGTACGAGGACATCTTCAAAGTAGCCAATGTCTACGAGAGGGTGTCAAAAGTTGTTGCATGTTAGGCCCTGGAAACTTCAGTGGGGACGAACTCTTGTCATGGTGTCTAAAGAGACCTTTCATTGAAAGATTACCTCCATCTTCATCGACACTAGTCACACTTGAGACCACAGAAGCTTTTGAGCTACATTCTGAAGATGTGAAGTATGTTACACAACATTTTAGGTACACTTTTGTGAATGAAAAAGTGAAGATGAGTGCAAGATATTATTCACCAGGATGGAGGACTTGGGCAGCTGTTGCGATTCAATTGGCTTGGAGAAGGTACAAGCACATGCTTACACTCAACTTGTTGTCGTTTATTAGACCAAGGAATCCTTTGTCGAGGTGTTCTTCACTTGGGGAAGATAGGGTAAGACTTTATACGGCTCTCTTGACTTCGCCAAAGCCCAATCAAGATGATTTTGACTTTTAA | 1941 | 44.1 | MASRNEPSDAYTETTDEEEKMYNKILHGICSPRGRTRNDQRSPWVQDWNQVFLLVCAMGLFVDPLFFYTLSISESCMCVYVDRWLAVTVTVLRCMTDALHVWNMWLQFKMKRSSPAYQQLNTDEMTVRKVVMRLMTEAKNRFSLDIFVILPISQVVLWVVIPTLLEKGSTTFVMTVFLIMFIFQYLPKIYHFVRLLRRTQNRSGYIFDTVWWGVAFNMIAYFVASHAVGACWYLLGTQRVARCLMEKCMETNRCTPRVLTCEEFIYYGTNRLVGDMSRLLWGENRSARSTCLQDNNGFTFGAYKWTVQLVSNKSRLEKILFPIFWGLMTLSTFGNLESATDSLEVVFTVAVLTTGLLLVTMLIGNIKVFFHATTSKKQAMQLKMRDIEWWMRRRNLPQGFRQRVRNYERQNWAAMRGVDESEMICNLPEGLRRDIKYHLCLDLVRQVPLFQHMNNLVLENICDRVRPLIFTKGEIITREGDPVQRMLFIVRGHLQSSQCLREGVKSCCMLGPGNFSGDELLSWCLKRPFIERLPPSSSTLVTLETTEAFELHSEDVKYVTQHFRYTFVNEKVKMSARYYSPGWRTWAAVAIQLAWRRYKHMLTLNLLSFIRPRNPLSRCSSLGEDRVRLYTALLTSPKPNQDDFDF | 646 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cich4g04665 | 646 | FunFam | Cyclic nucleotide-gated ion channel 1 | 376 | 440 | - | - | |
| Cich4g04665 | 646 | SUPERFAMILY | Voltage-gated potassium channels | 41 | 370 | - | - | |
| Cich4g04665 | 646 | CDD | CAP-ED | 449 | 555 | IPR000595 | - | |
| Cich4g04665 | 646 | FunFam | cyclic nucleotide-gated ion channel 4 | 447 | 565 | - | - | |
| Cich4g04665 | 646 | PANTHER | CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED | 38 | 600 | - | - | |
| Cich4g04665 | 646 | Pfam | Cyclic nucleotide-binding domain | 470 | 558 | IPR000595 | - | |
| Cich4g04665 | 646 | ProSiteProfiles | cAMP-cGMP binding motif profile. | 449 | 528 | IPR000595 | - | |
| Cich4g04665 | 646 | SUPERFAMILY | cAMP-binding domain-like | 375 | 563 | IPR018490 | - | |
| Cich4g04665 | 646 | Gene3D | Jelly Rolls | 447 | 565 | IPR014710 | - | |
| Cich4g04665 | 646 | Gene3D | Helix hairpin bin | 374 | 440 | - | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cich4g04665 | K05391 | cyclic nucleotide gated channel, plant |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Cich | Cich-Chr4:134219839 | Cich7g00716 | Cich-Chr7:21951115 | dispersed | |
| Cich | Cich-Chr4:134219839 | Cich7g00715 | Cich-Chr7:21913157 | wgd |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Cich9g00542 | . | 8 | 848 | Ion Channels gene family | AT2G29100 | 30.901 | 2.21e-117 | 378.0 | |
| Cich9g00933 | . | 33 | 874 | Ion Channels gene family | AT2G29120 | 46.27 | 0.0 | 771.0 | |
| Cich9g00934 | . | 33 | 874 | Ion Channels gene family | AT2G29120 | 46.145 | 0.0 | 770.0 | |
| Cich9g00939 | . | 19 | 410 | Ion Channels gene family | AT2G29120 | 40.302 | 6.33e-92 | 300.0 | |
| Cich9g00940 | . | 1 | 552 | Ion Channels gene family | AT2G24710 | 39.68 | 8.21e-129 | 401.0 | |
| Cich9g00941 | . | 7 | 872 | Ion Channels gene family | AT2G29120 | 44.532 | 0.0 | 754.0 | |
| Cich9g02004 | . | 479 | 707 | Ion Channels gene family | AT4G30560 | 56.769 | 1.37e-77 | 247.0 | |
| Cich9g02018 | . | 464 | 697 | Ion Channels gene family | AT5G57940 | 59.829 | 1.62e-91 | 283.0 | |
| Cich9g02035 | . | 469 | 656 | Ion Channels gene family | AT1G19780 | 58.883 | 2.13e-70 | 227.0 | |
| Cich9g02055 | . | 1 | 725 | Ion Channels gene family | AT2G24610 | 67.35 | 0.0 | 1005.0 | |
| Cich9g02674 | . | 3 | 855 | Ion Channels gene family | AT2G26650 | 57.471 | 0.0 | 1004.0 | |
| Cich8g00673 | . | 173 | 255 | Ion Channels gene family | AT4G30360 | 72.289 | 7.84e-35 | 128.0 | |
| Cich8g01047 | . | 418 | 528 | Ion Channels gene family | AT3G02850 | 38.938 | 2.70e-16 | 73.9 | |
| Cich8g01641 | ACH | 546 | 727 | Ion Channels gene family | AT4G32500 | 27.368 | 2.83e-11 | 65.5 | |
| Cich8g03069 | . | 583 | 701 | Ion Channels gene family | AT1G01340 | 54.098 | 9.23e-38 | 132.0 | |
| Cich8g03071 | . | 1 | 715 | Ion Channels gene family | AT5G53130 | 63.7 | 0.0 | 934.0 | |
| Cich7g00058 | ACH | 4 | 779 | Ion Channels gene family | AT5G49890 | 76.804 | 0.0 | 1186.0 | |
| Cich7g00106 | . | 19 | 726 | Ion Channels gene family | AT5G15410 | 72.829 | 0.0 | 1009.0 | |
| Cich7g00715 | . | 80 | 692 | Ion Channels gene family | AT5G54250 | 77.184 | 0.0 | 999.0 | |
| Cich7g00716 | . | 87 | 692 | Ion Channels gene family | AT5G54250 | 76.442 | 0.0 | 960.0 | |
| Cich7g00959 | . | 175 | 308 | Ion Channels gene family | AT5G55630 | 44.776 | 3.48e-36 | 125.0 | |
| Cich7g01410 | ACH | 496 | 882 | Ion Channels gene family | AT2G17260 | 35.949 | 1.26e-61 | 213.0 | |
| Cich7g01412 | . | 569 | 891 | Ion Channels gene family | AT2G17260 | 35.347 | 2.93e-54 | 189.0 | |
| Cich7g01526 | . | 9 | 717 | Ion Channels gene family | AT5G57940 | 74.583 | 0.0 | 1092.0 | |
| Cich7g01636 | ACH | 525 | 713 | Ion Channels gene family | AT5G37500 | 30.052 | 8.31e-12 | 66.6 | |
| Cich7g02312 | . | 1 | 677 | Ion Channels gene family | AT5G46240 | 56.873 | 0.0 | 821.0 | |
| Cich7g02453 | . | 19 | 846 | Ion Channels gene family | AT2G29120 | 32.982 | 5.10e-149 | 463.0 | |
| Cich7g02454 | . | 19 | 861 | Ion Channels gene family | AT2G29120 | 33.564 | 1.22e-150 | 467.0 | |
| Cich6g00097 | . | 110 | 161 | Ion Channels gene family | AT2G32390 | 67.308 | 3.75e-18 | 75.5 | |
| Cich6g00117 | . | 1 | 716 | Ion Channels gene family | AT5G53130 | 75.208 | 0.0 | 1098.0 | |
| Cich6g00878 | . | 477 | 515 | Ion Channels gene family | AT5G49890 | 69.231 | 3.16e-11 | 61.2 | |
| Cich6g01112 | . | 43 | 637 | Ion Channels gene family | AT2G28260 | 55.201 | 0.0 | 718.0 | |
| Cich6g01548 | . | 1 | 678 | Ion Channels gene family | AT2G28260 | 69.176 | 0.0 | 986.0 | |
| Cich6g01701 | . | 134 | 374 | Ion Channels gene family | AT3G27170 | 69.71 | 1.74e-116 | 348.0 | |
| Cich6g01727 | . | 360 | 775 | Ion Channels gene family | AT5G40890 | 67.386 | 0.0 | 567.0 | |
| Cich6g01735 | ACH | 539 | 702 | Ion Channels gene family | AT5G37500 | 27.907 | 4.00e-08 | 55.1 | |
| Cich6g01949 | . | 54 | 726 | Ion Channels gene family | AT5G15410 | 53.23 | 0.0 | 715.0 | |
| Cich6g02429 | . | 23 | 903 | Ion Channels gene family | AT3G51480 | 59.301 | 0.0 | 1114.0 | |
| Cich6g02430 | . | 24 | 889 | Ion Channels gene family | AT3G51480 | 59.127 | 0.0 | 1090.0 | |
| Cich6g02556 | . | 22 | 284 | Ion Channels gene family | AT3G02850 | 62.642 | 1.18e-113 | 345.0 | |
| Cich6g03555 | . | 7 | 58 | Ion Channels gene family | AT2G26650 | 69.231 | 2.49e-20 | 81.3 | |
| Cich6g03628 | . | 121 | 745 | Ion Channels gene family | AT3G17700 | 67.195 | 0.0 | 848.0 | |
| Cich6g03670 | . | 176 | 745 | Ion Channels gene family | AT3G17700 | 57.093 | 0.0 | 659.0 | |
| Cich6g03672 | . | 379 | 696 | Ion Channels gene family | AT3G17690 | 58.491 | 4.60e-131 | 391.0 | |
| Cich6g03677 | . | 49 | 745 | Ion Channels gene family | AT3G17700 | 60.028 | 0.0 | 806.0 | |
| Cich6g03681 | . | 7 | 745 | Ion Channels gene family | AT3G17700 | 50.0 | 0.0 | 682.0 | |
| Cich6g04213 | . | 12 | 924 | Ion Channels gene family | AT1G42540 | 63.279 | 0.0 | 1204.0 | |
| Cich5g01010 | . | 10 | 728 | Ion Channels gene family | AT4G30560 | 64.161 | 0.0 | 954.0 | |
| Cich5g02872 | . | 15 | 430 | Ion Channels gene family | AT4G18160 | 62.708 | 1.86e-174 | 493.0 | |
| Cich5g03107 | . | 15 | 390 | Ion Channels gene family | AT4G18160 | 62.205 | 5.37e-157 | 447.0 | |
| Cich5g03957 | . | 565 | 778 | Ion Channels gene family | AT3G27170 | 44.393 | 1.39e-45 | 160.0 | |
| Cich5g04379 | . | 57 | 359 | Ion Channels gene family | AT5G55630 | 52.475 | 2.60e-117 | 341.0 | |
| Cich4g00012 | . | 53 | 405 | Ion Channels gene family | AT4G01840 | 58.449 | 9.03e-140 | 403.0 | |
| Cich4g00538 | . | 487 | 567 | Ion Channels gene family | AT4G22200 | 44.444 | 9.09e-10 | 59.3 | |
| Cich4g00553 | . | 462 | 825 | Ion Channels gene family | AT3G07520 | 44.142 | 8.34e-98 | 312.0 | |
| Cich4g01944 | . | 1 | 700 | Ion Channels gene family | AT5G14870 | 60.085 | 0.0 | 870.0 | |
| Cich4g03497 | ACH | 8 | 779 | Ion Channels gene family | AT5G49890 | 75.42 | 0.0 | 1140.0 | |
| Cich4g03619 | . | 47 | 726 | Ion Channels gene family | AT5G15410 | 71.076 | 0.0 | 951.0 | |
| Cich4g04208 | . | 56 | 932 | Ion Channels gene family | AT1G05200 | 63.883 | 0.0 | 1199.0 | |
| Cich4g04209 | . | 11 | 900 | Ion Channels gene family | AT2G32400 | 53.803 | 0.0 | 998.0 | |
| Cich4g04665 | . | 81 | 692 | Ion Channels gene family | AT5G54250 | 73.573 | 0.0 | 931.0 | |
| Cich3g00775 | . | 17 | 187 | Ion Channels gene family | AT4G18160 | 33.708 | 2.49e-14 | 68.2 | |
| Cich3g00776 | . | 20 | 431 | Ion Channels gene family | AT4G18160 | 58.824 | 2.09e-161 | 460.0 | |
| Cich3g00916 | . | 148 | 715 | Ion Channels gene family | AT5G53130 | 59.862 | 0.0 | 697.0 | |
| Cich3g00923 | . | 334 | 715 | Ion Channels gene family | AT5G53130 | 56.623 | 3.38e-141 | 419.0 | |
| Cich3g01942 | . | 1 | 725 | Ion Channels gene family | AT4G03560 | 65.616 | 0.0 | 1007.0 | |
| Cich3g02004 | . | 1 | 731 | Ion Channels gene family | AT4G03560 | 65.141 | 0.0 | 996.0 | |
| Cich3g02179 | . | 30 | 900 | Ion Channels gene family | AT4G35290 | 62.342 | 0.0 | 1115.0 | |
| Cich3g02718 | . | 572 | 610 | Ion Channels gene family | AT4G03560 | 66.667 | 8.55e-13 | 60.8 | |
| Cich3g05261 | . | 14 | 699 | Ion Channels gene family | AT5G14870 | 65.85 | 0.0 | 948.0 | |
| Cich3g05401 | . | 1 | 775 | Ion Channels gene family | AT5G40890 | 77.091 | 0.0 | 1211.0 | |
| Cich2g02104 | . | 508 | 713 | Ion Channels gene family | AT4G32500 | 27.083 | 1.50e-07 | 53.1 | |
| Cich2g02284 | . | 102 | 733 | Ion Channels gene family | AT3G02850 | 62.893 | 0.0 | 849.0 | |
| Cich2g02287 | . | 74 | 733 | Ion Channels gene family | AT3G02850 | 65.758 | 0.0 | 934.0 | |
| Cich2g03006 | . | 645 | 719 | Ion Channels gene family | AT2G24720 | 50.667 | 1.52e-12 | 62.4 | |
| Cich2g03145 | . | 90 | 344 | Ion Channels gene family | AT5G40890 | 24.521 | 4.30e-07 | 51.6 | |
| Cich2g03362 | . | 88 | 887 | Ion Channels gene family | AT3G51480 | 57.161 | 0.0 | 963.0 | |
| Cich2g03372 | . | 11 | 897 | Ion Channels gene family | AT3G51480 | 56.264 | 0.0 | 1060.0 | |
| Cich2g03373 | . | 23 | 887 | Ion Channels gene family | AT3G51480 | 58.161 | 0.0 | 1082.0 | |
| Cich2g03721 | . | 308 | 737 | Ion Channels gene family | AT5G48400 | 28.753 | 8.41e-48 | 176.0 | |
| Cich2g03785 | . | 29 | 816 | Ion Channels gene family | AT5G48410 | 36.194 | 2.47e-166 | 503.0 | |
| Cich2g03787 | ACH | 34 | 851 | Ion Channels gene family | AT2G29120 | 36.804 | 1.12e-170 | 516.0 | |
| Cich2g03933 | . | 7 | 856 | Ion Channels gene family | AT2G26650 | 67.349 | 0.0 | 1236.0 | |
| Cich2g04008 | . | 7 | 765 | Ion Channels gene family | AT5G33280 | 73.123 | 0.0 | 1110.0 | |
| Cich2g04028 | ACH | 505 | 713 | Ion Channels gene family | AT5G37500 | 30.374 | 1.64e-13 | 72.0 | |
| Cich2g04123 | . | 1 | 717 | Ion Channels gene family | AT5G57940 | 75.586 | 0.0 | 1122.0 | |
| Cich2g04197 | . | 1 | 719 | Ion Channels gene family | AT4G30360 | 67.891 | 0.0 | 1001.0 | |
| Cich2g04204 | . | 235 | 778 | Ion Channels gene family | AT5G11210 | 36.909 | 5.83e-118 | 375.0 | |
| Cich1g01263 | . | 5 | 795 | Ion Channels gene family | AT4G22200 | 65.223 | 0.0 | 1080.0 | |
| Cich1g01818 | . | 58 | 931 | Ion Channels gene family | AT1G05200 | 65.188 | 0.0 | 1233.0 | |
| Cich1g01883 | . | 45 | 849 | Ion Channels gene family | AT2G24710 | 29.248 | 5.73e-103 | 338.0 | |
| Cich1g01884 | . | 13 | 863 | Ion Channels gene family | AT5G27100 | 28.769 | 3.73e-108 | 352.0 | |
| Cich1g01891 | . | 58 | 878 | Ion Channels gene family | AT2G29120 | 30.346 | 1.13e-126 | 400.0 | |
| Cich1g01892 | . | 34 | 828 | Ion Channels gene family | AT2G24720 | 28.642 | 1.07e-103 | 340.0 | |
| Cich1g02707 | . | 3 | 717 | Ion Channels gene family | AT5G57940 | 74.136 | 0.0 | 1072.0 | |
| Cich1g03790 | . | 1 | 678 | Ion Channels gene family | AT2G28260 | 71.739 | 0.0 | 1021.0 | |
| Cich1g04094 | . | 38 | 634 | Ion Channels gene family | AT2G28260 | 58.459 | 0.0 | 747.0 | |
| Cich1g04095 | . | 38 | 634 | Ion Channels gene family | AT2G28260 | 57.119 | 0.0 | 730.0 | |
| Cich1g04198 | . | 548 | 715 | Ion Channels gene family | AT2G25600 | 34.911 | 4.37e-15 | 71.2 | |
| Cich1g04772 | . | 68 | 360 | Ion Channels gene family | AT5G55630 | 65.188 | 6.13e-144 | 411.0 | |
| Cich1g05029 | ACH | 29 | 661 | Ion Channels gene family | AT4G32650 | 59.502 | 0.0 | 759.0 |