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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cich4g04667 ATGTTAGAAGGAAAAGCTGTGATCGGGGAGACAGATATGCTTCAGACGATGCAAGAAGATGCACTTCAACTCGCGGCTAAAGCACTGGACTTCTTTGATGTTACAGAAGCCACTGAAATAGCCCGAGTGATTAAACAGGAATTCGACAGGATGTATGGAGGTGGTTGGCAGTGTATTGTAGGGACTGACTTTGGTTCGTTTGTGACTCATTGTTATGGGTCTTTCATCCATTTTTCTGTCGGGAGTCTTTCGATTTTGCTGTTTAGAGGATCAGGAGCTCCTGAGAACGATGAGTTTTCGACATTGGAGGGTGTAAAAGCATGA 324 44.44 MLEGKAVIGETDMLQTMQEDALQLAAKALDFFDVTEATEIARVIKQEFDRMYGGGWQCIVGTDFGSFVTHCYGSFIHFSVGSLSILLFRGSGAPENDEFSTLEGVKA 107
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cich4g04667 107 FunFam Dynein light chain 1 90 - -
Cich4g04667 107 CDD DLC-like-DYNLL1-DYNLL2 5 89 - -
Cich4g04667 107 SUPERFAMILY DLC 1 90 IPR037177 GO:0007017(InterPro)|GO:0030286(InterPro)
Cich4g04667 107 PANTHER DYNEIN LIGHT CHAIN 7 89 IPR001372 GO:0005868(PANTHER)|GO:0007017(InterPro)|GO:0030286(InterPro)|GO:0045505(PANTHER)
Cich4g04667 107 SMART Dynein-light-2 1 90 IPR001372 GO:0007017(InterPro)|GO:0030286(InterPro)
Cich4g04667 107 Gene3D Protein Inhibitor Of Neuronal Nitric Oxide Synthase; 2 90 IPR037177 GO:0007017(InterPro)|GO:0030286(InterPro)
Cich4g04667 107 Pfam Dynein light chain type 1 5 89 IPR001372 GO:0007017(InterPro)|GO:0030286(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cich4g04667 K10418 dynein light chain LC8-type
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cich Cich-Chr3:61235318 Cich4g04667 Cich-Chr4:134249163 dispersed
Cich Cich-Chr4:134249163 Cich9g01059 Cich-Chr9:21995865 dispersed
Cich Cich-Chr4:134249163 Cich7g01734 Cich-Chr7:78192302 transposed