AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cich4g04669 ATGGCATTCAAAAGGAGCTTATTTTTTATCGTCTTCACAATAATTGTTGTTTCAGGTGCAATTACACAAGTGAAAGCTTATACATCCGCTTACTGCAATTCTGCGTCCCGTTGTCCATATCAATATATCACATGTCCATCTGAATGCCCCGAAAGCAGCTCCTACGACACCAAGGCTAAAGTTTGTCGCATTGATTGTTATTCTCCTAAATGCAAGGCCGAATGCAAACACAACAATAAACCAGACTGTGACACACCGGGATCAGCATGCTACGACCCACGGTTCATAGGGGGAGACAGCATTGTGTTCTACTTTCACGGCAAGGTTGACCAGCATTTCAGCTTGGTCTCCGACTCTAACCTCCAAATCAACGGACGATTCATTGGCCACCAACCCACCGGCAGGTCAAGGCCCTTCACCTGGATCCAAGCCTTGGGTCTCCTCTTCAATTCCCACAGTTTCTCCCTAGAAGCCACTAAAAGCGCCACCTGGGATGGTGGTATCGACCATCTGAAATTCTCCTACGATGGAGAAGAAATTTTGTTGGGTCTCGGTGGTTTATCCTCATGGAAGTCGCCGGAGGGTGAAATCGAAGTGGAGAGAACTGCTGCGGTGAACAGCGTGATGGTGAACATACCTGGAGTTGTGGAGATATTGGCAAATGTGGTGCCGGTGACAGCGGAAGATGACAAGATCCATGGCTACAATGTGCCTTCTGATGACTGCTTTGCTCACTTGGAAGTGCAGTTTAAGTTTAGCGGACTTTCTGACGATGTCGAAGGGGTATTGGGGAGGACATATCAGCCGGATTTTAAGAACCCCGCGAAGCCAGGTGTGGCTATGGCGGTTGTGGGAGGAGAAGACAAGTATAGAACCACCTCTTTGTTGTCGTCTGATTGTGCAAACTGCATCTATGATTCGAGTAACGAGAAGCAGATTATTAAGGAGCACGGAACATTGGATTGTTCAGCTACGGGATTGTTCCATGGAAATGGAATCGTGTGCAAGAAATGA 1014 47.44 MAFKRSLFFIVFTIIVVSGAITQVKAYTSAYCNSASRCPYQYITCPSECPESSSYDTKAKVCRIDCYSPKCKAECKHNNKPDCDTPGSACYDPRFIGGDSIVFYFHGKVDQHFSLVSDSNLQINGRFIGHQPTGRSRPFTWIQALGLLFNSHSFSLEATKSATWDGGIDHLKFSYDGEEILLGLGGLSSWKSPEGEIEVERTAAVNSVMVNIPGVVEILANVVPVTAEDDKIHGYNVPSDDCFAHLEVQFKFSGLSDDVEGVLGRTYQPDFKNPAKPGVAMAVVGGEDKYRTTSLLSSDCANCIYDSSNEKQIIKEHGTLDCSATGLFHGNGIVCKK 337
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cich4g04669 337 PANTHER ROOT CAP DOMAIN-CONTAINING PROTEIN 26 337 - -
Cich4g04669 337 Pfam Root cap 249 305 IPR009646 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cich4g04669 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cich Cich-Chr3:31168216 Cich4g04669 Cich-Chr4:134290820 dispersed
Cich Cich-Chr3:31199143 Cich4g04669 Cich-Chr4:134290820 dispersed
Cich Cich-Chr4:117107936 Cich4g04669 Cich-Chr4:134290820 dispersed
Cich Cich-Chr4:134290820 Cich4g04672 Cich-Chr4:134353109 dispersed
Cich Cich-Chr4:134286721 Cich4g04669 Cich-Chr4:134290820 tandem