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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cich4g04675 ATGGCTGCTGTCACACTTTCTCCGGCCACTCCTCAGTGTTTTTCTAGCAAGAACGAAGCATTCTCACCGACCAAGGGACTAATGGCGAAATCGACCAGATTTGAAACCGCGGTACAGGAAAAGGGGACGAAGGTCAAATGTCAGGCAGCAAGCATTGGCGCCGACGGCGTTTCTGATATGGAGAGGAGGAAGCTCATGAACTTGTTGCTATTCGGCGCTATTGGTTTACCCGCCGCCGGCATGTTGGTCCCTTTTACCGCTCGACCTAGTTCATGGGGTTCAAGAGGTGGGACCACCGCTAAGGACGAATTCGGAAACGATATTATCGCATCAGAATGGCTAAACACCCATCCACCTGGTGACAAAACCCTCACTCAAGGCTTAAAGGGAGATCCAACATACATTATAATCGAGAACAACAGACCTATTGCAACATACGGGATTAATGCGGTATGCACACATTTGGGGTGTATTGTACCATGGAACACAGTAGAAAAGAAGTTTATGTGCCCATGCCATGGCTCCCAATATGATAATTTTGGCAAAGTTATTAAAGGTCCTGCTCTTAAGTCTTTGGAATTGGCGCATGTGGATGTAGAAGATGACAAAGTCGTGTTTGCTCCATGGACAGAGATGGATTTTAGAACACGTGATGCTCCATGGCGGTCTTAA 672 47.32 MAAVTLSPATPQCFSSKNEAFSPTKGLMAKSTRFETAVQEKGTKVKCQAASIGADGVSDMERRKLMNLLLFGAIGLPAAGMLVPFTARPSSWGSRGGTTAKDEFGNDIIASEWLNTHPPGDKTLTQGLKGDPTYIIIENNRPIATYGINAVCTHLGCIVPWNTVEKKFMCPCHGSQYDNFGKVIKGPALKSLELAHVDVEDDKVVFAPWTEMDFRTRDAPWRS 223
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cich4g04675 223 CDD Rieske-cytochrome-b6f 98 221 - -
Cich4g04675 223 Gene3D Single helix bin 48 87 - -
Cich4g04675 223 PRINTS Rieske 2Fe-2S subunit signature 168 180 IPR005805 GO:0016020(InterPro)|GO:0051537(InterPro)
Cich4g04675 223 PRINTS Rieske 2Fe-2S subunit signature 180 192 IPR005805 GO:0016020(InterPro)|GO:0051537(InterPro)
Cich4g04675 223 PRINTS Rieske 2Fe-2S subunit signature 147 158 IPR005805 GO:0016020(InterPro)|GO:0051537(InterPro)
Cich4g04675 223 FunFam Cytochrome b6-f complex iron-sulfur subunit 89 223 - -
Cich4g04675 223 SUPERFAMILY ISP domain 55 222 IPR036922 GO:0051537(InterPro)
Cich4g04675 223 ProSiteProfiles Rieske [2Fe-2S] iron-sulfur domain profile. 110 206 IPR017941 GO:0051537(InterPro)
Cich4g04675 223 Pfam Rieske [2Fe-2S] domain 145 192 IPR017941 GO:0051537(InterPro)
Cich4g04675 223 Gene3D - 88 223 IPR036922 GO:0051537(InterPro)
Cich4g04675 223 PANTHER CYTOCHROME B-C1 COMPLEX SUBUNIT RIESKE, MITOCHONDRIAL 30 211 IPR014349 GO:0005886(PANTHER)|GO:0016491(PANTHER)|GO:0051537(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cich4g04675 K02636 cytochrome b6-f complex iron-sulfur subunit [EC:7.1.1.6]
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Event-related genes

Select Gene_1 Gene_2 Event_name
63055 Cich4g04675 Cich7g00720
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cich Cich-Chr4:134393733 Cich7g00720 Cich-Chr7:22086031 wgd