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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cich4g04682 ATGCAACCCCAGAAAACCCTACCGGAATCTGACTTACCATCTCTCGCCGCCATCAAAGTCAAGTCATCATCCCCTCGTTTCCGTCCTACGAATCCTTCCGCCACAGAAACCCCCACCGCCGGCGCGCAGCGCAAGATAGGCATCGCCGTCGATCTTAGTGACGAGAGCGCCTTTGCTGTGAAGTGGGCTGTTCACCAGTATCTCCGCCCCGGTGACGCCGTGATCCTCATCCACGTCCGTCCTACTTCCGTCCTTTACGGCGCTGATTGGGGCTCTGTTGATCTTTCCATCGTCGACACCGACAATGAGGAATCACAGCGGAAGCTCGAAGATGATTTCGATGCTTTCACTACTACGAAATCCGCTGCCCTAGCGCAACCTCTAGTCGACGCGCACATACCTTACAAGATCCATATCGTCAAAGACCATGATATGAAGGAGAGGCTGTGTTTGGAAGTCGAGAGGCTAGGGTTATGTGCTGTTATCATGGGAAGCCGAGGATTCGGTGCTACGAAACGCGGAAGCGATGGAAGGCTCGGGAGTGTTAGCGATTACTGTGTGCGTCACTGTGTGTGCCCCGTGGTAGTTGTGAGATATCCCGATGAGAAAGATCCCTCTGCCGCTGAGCCGATTGTTTCGGTGGCAAGAGCCGACGATGAAGAAGACGATCCTGAATTCCATGATGCAACCGATGAACGAAAATGTTAG 708 53.53 MQPQKTLPESDLPSLAAIKVKSSSPRFRPTNPSATETPTAGAQRKIGIAVDLSDESAFAVKWAVHQYLRPGDAVILIHVRPTSVLYGADWGSVDLSIVDTDNEESQRKLEDDFDAFTTTKSAALAQPLVDAHIPYKIHIVKDHDMKERLCLEVERLGLCAVIMGSRGFGATKRGSDGRLGSVSDYCVRHCVCPVVVVRYPDEKDPSAAEPIVSVARADDEEDDPEFHDATDERKC 235
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cich4g04682 235 MobiDBLite consensus disorder prediction 204 235 - -
Cich4g04682 235 CDD USP-Like 45 197 - -
Cich4g04682 235 PANTHER OS01G0783500 PROTEIN 8 234 IPR044162 -
Cich4g04682 235 Gene3D HUPs 33 210 IPR014729 -
Cich4g04682 235 Pfam Universal stress protein family 44 198 IPR006016 -
Cich4g04682 235 MobiDBLite consensus disorder prediction 24 40 - -
Cich4g04682 235 PRINTS Universal stress protein signature 43 61 IPR006015 -
Cich4g04682 235 PRINTS Universal stress protein signature 176 198 IPR006015 -
Cich4g04682 235 MobiDBLite consensus disorder prediction 1 41 - -
Cich4g04682 235 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 44 202 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cich4g04682 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Cich Cich-Chr2:111107267 Cich4g04682 Cich-Chr4:134494897 dispersed
Cich Cich-Chr3:154732546 Cich4g04682 Cich-Chr4:134494897 dispersed
Cich Cich-Chr4:134494897 Cich7g02623 Cich-Chr7:94263301 dispersed
Cich Cich-Chr4:134494897 Cich3g02118 Cich-Chr3:40260000 transposed