AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cich4g04715 ATGGCGATTGTACGGCAGAAACACACACTACTTCTCGTACTACTATGTGCCATTCTTCCCTTTTCTCATTCACAATCGGAATCGGAATCAGTAACAGAATCTTCCATACACGATCTCCTCAAAAGCAAAGGCTTACCGGTTGGCCTGTTCCCGAAAGAAGTCGAATCATTCACTCTATACGACACAGGGCTTCTTGAAGTGTTCTTGAGAGGACCTTGTTTAACGAAATTCGATACGATGGCGTTTTACGAAAGCACAGTCAGAGCTAACCTTACTTACGGAAGCCTTACCAGCGTTGAAGGGTTATCTCAAGAAGAGCTTTTTCTCTGGTTGCCGGTGAAAGATATTATCGTCGACGATCCCAAATCTGGACTCATATTATTCGACATTGGCCTCGCTTACAAACAGCTGTCACTCTCACTTTTCGAAGATCCTCCTGATTGTAAAACCGAAGATATTTTGAATTTGAAGAATTTGAAGAAGAAATCTAGGAAGGAGATAGGATTTGAAGCCCAAATGTAG 522 42.34 MAIVRQKHTLLLVLLCAILPFSHSQSESESVTESSIHDLLKSKGLPVGLFPKEVESFTLYDTGLLEVFLRGPCLTKFDTMAFYESTVRANLTYGSLTSVEGLSQEELFLWLPVKDIIVDDPKSGLILFDIGLAYKQLSLSLFEDPPDCKTEDILNLKNLKKKSRKEIGFEAQM 173
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cich4g04715 173 PANTHER T31J12.3 PROTEIN-RELATED 25 149 IPR007493 -
Cich4g04715 173 FunFam Uncharacterized protein At3g07460 21 152 - -
Cich4g04715 173 SUPERFAMILY At5g01610-like 10 150 IPR036758 -
Cich4g04715 173 Gene3D - 23 153 IPR036758 -
Cich4g04715 173 Pfam Protein of unknown function, DUF538 36 143 IPR007493 -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cich4g04715 - -
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
1648995 Cich Cich4g01706 Cich-Chr4:33088721 Cich4g04715 Cich-Chr4:135545208
1651119 Cich Cich4g04715 Cich-Chr4:135545208 Cich5g04318 Cich-Chr5:122400972
1670780 Cich Cich4g04715 Cich-Chr4:135545208 Cich2g03795 Cich-Chr2:136144779